Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05050

Experiment: Glucose (C) and Betaine (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and Betaine (N); with TAPS
1,126,617	+		PFLU_RS05045	0.17	-0.5
1,126,617	+		PFLU_RS05045	0.17	+0.2
1,126,617	+		PFLU_RS05045	0.17	+1.2
1,126,617	+		PFLU_RS05045	0.17	-2.1
1,126,617	+		PFLU_RS05045	0.17	+1.3
1,126,618	-		PFLU_RS05045	0.17	+0.5
1,126,618	-		PFLU_RS05045	0.17	+0.5
1,126,733	-		PFLU_RS05045	0.31	-0.4
1,126,733	-		PFLU_RS05045	0.31	+1.6
1,126,733	-		PFLU_RS05045	0.31	-0.6
1,126,733	-		PFLU_RS05045	0.31	-0.4
1,126,751	+		PFLU_RS05045	0.33	-0.5
1,126,751	+		PFLU_RS05045	0.33	-1.9
1,126,752	-		PFLU_RS05045	0.33	+0.0
1,126,752	-		PFLU_RS05045	0.33	+1.0
1,126,752	-		PFLU_RS05045	0.33	-1.9
1,126,752	-		PFLU_RS05045	0.33	+0.8
1,126,752	-		PFLU_RS05045	0.33	-0.0
1,126,752	-		PFLU_RS05045	0.33	-0.2
1,126,886	+		PFLU_RS05045	0.50	+0.5
1,126,886	+		PFLU_RS05045	0.50	+1.6
1,126,886	+		PFLU_RS05045	0.50	+1.3
1,126,886	+		PFLU_RS05045	0.50	+1.1
1,126,886	+		PFLU_RS05045	0.50	+0.4
1,126,886	+		PFLU_RS05045	0.50	+1.3
1,126,886	+		PFLU_RS05045	0.50	+0.7
1,126,886	+		PFLU_RS05045	0.50	+0.3
1,126,886	+		PFLU_RS05045	0.50	-1.9
1,126,886	+		PFLU_RS05045	0.50	-1.1
1,126,886	+		PFLU_RS05045	0.50	+0.6
1,126,886	+		PFLU_RS05045	0.50	+0.3
1,126,886	+		PFLU_RS05045	0.50	+0.9
1,126,887	-		PFLU_RS05045	0.50	+0.9
1,126,887	-		PFLU_RS05045	0.50	-0.3
1,126,887	-		PFLU_RS05045	0.50	+0.5
1,126,887	-		PFLU_RS05045	0.50	+0.3
1,126,887	-		PFLU_RS05045	0.50	+0.5
1,126,887	-		PFLU_RS05045	0.50	+0.7
1,126,887	-		PFLU_RS05045	0.50	+0.1
1,126,910	+		PFLU_RS05045	0.52	+0.5
1,126,910	+		PFLU_RS05045	0.52	-1.0
1,126,910	+		PFLU_RS05045	0.52	+0.3
1,126,910	+		PFLU_RS05045	0.52	-2.2
1,126,911	-		PFLU_RS05045	0.53	-2.2
1,126,911	-		PFLU_RS05045	0.53	-0.2
1,126,911	-		PFLU_RS05045	0.53	-0.5
1,126,994	+		PFLU_RS05045	0.63	-1.1
1,126,994	+		PFLU_RS05045	0.63	-1.2
1,126,994	+		PFLU_RS05045	0.63	+0.1
1,126,994	+		PFLU_RS05045	0.63	-0.1
1,126,994	+		PFLU_RS05045	0.63	+0.1
1,126,995	-		PFLU_RS05045	0.63	-0.3
1,126,995	-		PFLU_RS05045	0.63	-0.6
1,126,995	-		PFLU_RS05045	0.63	-1.2
1,127,021	+		PFLU_RS05045	0.66	+1.5
1,127,021	+		PFLU_RS05045	0.66	+0.8
1,127,021	+		PFLU_RS05045	0.66	-0.2
1,127,021	+		PFLU_RS05045	0.66	-0.3
1,127,022	-		PFLU_RS05045	0.66	-1.0
1,127,022	-		PFLU_RS05045	0.66	-0.7
1,127,022	-		PFLU_RS05045	0.66	+1.3
1,127,091	+		PFLU_RS05045	0.74	+0.1
1,127,091	+		PFLU_RS05045	0.74	-1.0
1,127,091	+		PFLU_RS05045	0.74	-0.7
1,127,092	-		PFLU_RS05045	0.74	+0.0
1,127,092	-		PFLU_RS05045	0.74	+0.6
1,127,092	-		PFLU_RS05045	0.74	-0.3
1,127,246	+				+0.5
1,127,246	+				-1.9
1,127,246	+				-0.4
1,127,246	+				-1.0
1,127,246	+				-0.7
1,127,246	+				-0.3
1,127,246	+				+0.6
1,127,247	-				-0.7
1,127,247	-				-0.9
1,127,247	-				-0.5
1,127,248	+				-0.3
1,127,249	-				+0.1
1,127,249	-				-1.0
1,127,267	-				-1.9
1,127,267	-				-2.3
1,127,288	+				-1.6
1,127,289	-				-0.2
1,127,289	-				-0.2
1,127,289	-				-0.5
1,127,302	+				+0.8
1,127,302	+				+0.7
1,127,302	+				+0.4
1,127,302	+				+0.6
1,127,303	-				+0.4
1,127,303	-				+0.5
1,127,303	-				+0.1
1,127,303	-				+1.1
1,127,329	+				+0.4
1,127,329	+				+0.1
1,127,329	+				+0.6
1,127,329	+				+0.4
1,127,329	+				+0.6
1,127,329	+				-1.3
1,127,329	+				-0.9
1,127,329	+				-0.2
1,127,330	-				+0.5
1,127,330	-				+1.2
1,127,330	-				-0.0
1,127,330	-				-0.0
1,127,330	-				-0.7
1,127,335	+				-0.4
1,127,335	+				+0.7
1,127,335	+				-2.3
1,127,335	+				-1.2
1,127,335	+				+0.3
1,127,335	+				+0.0
1,127,335	+				-1.0
1,127,335	+				-1.3
1,127,336	-				+0.3
1,127,336	-				+0.1
1,127,336	-				-0.2
1,127,336	-				+1.2
1,127,336	-				-0.2
1,127,336	-				-0.1
1,127,336	-				-1.2
1,127,336	-				-1.0
1,127,336	-				+0.4
1,127,336	-				-1.5
1,127,336	-				-1.4
1,127,342	+				-1.2
1,127,342	+				+0.3
1,127,342	+				+0.5
1,127,342	+				+1.1
1,127,342	+				-1.5
1,127,342	+				-0.1
1,127,342	+				-0.4
1,127,343	-				-0.8
1,127,343	-				+0.0
1,127,370	+				-1.2
1,127,449	+				-0.4
1,127,498	+				+1.3
1,127,498	+				+2.1
1,127,498	+				+0.8
1,127,498	+				+0.4
1,127,498	+				+0.7
1,127,499	-				-0.2
1,127,502	+				-0.2
1,127,502	+				-2.3
1,127,502	+				-1.2
1,127,502	+				-1.2
1,127,503	-				+1.4
1,127,503	-				-0.9
1,127,503	-				-0.6
1,127,503	-				+2.3
1,127,525	+				+0.6
1,127,525	+				+0.6
1,127,525	+				-0.1
1,127,526	-				+3.4
1,127,526	-				-0.9
1,127,526	-				-0.4
1,127,526	-				+0.3
1,127,526	-				-1.0
1,127,529	+				+0.9
1,127,529	+				-0.2
1,127,529	+				-0.3
1,127,529	+				-1.3
1,127,529	+				+0.8
1,127,529	+				+1.1
1,127,529	+				+0.8
1,127,529	+				+0.5
1,127,530	-				-1.4
1,127,530	-				+0.1
1,127,530	-				+0.6
1,127,530	-				+0.7
1,127,530	-				+1.8
1,127,530	-				-0.3
1,127,530	-				-0.0
1,127,530	-				+0.8
1,127,530	-				+0.3
1,127,530	-				+0.3
1,127,683	+		PFLU_RS05050	0.31	-1.5
1,127,925	+		PFLU_RS05050	0.69	-0.7
1,128,018	+		PFLU_RS05050	0.83	-1.6
1,128,019	-		PFLU_RS05050	0.83	-0.6
1,128,019	-		PFLU_RS05050	0.83	-3.3
1,128,019	-		PFLU_RS05050	0.83	-0.5
1,128,095	-				-1.0
1,128,095	-				-0.8
1,128,131	+				+0.5
1,128,131	+				+0.3
1,128,131	+				+0.7
1,128,132	-				-1.2
1,128,132	-				-0.6
1,128,135	+				-0.2
1,128,136	-				+0.7
1,128,175	+				-0.2
1,128,175	+				+0.6
1,128,176	-				+0.9
1,128,187	-				-0.1
1,128,187	-				+0.4
1,128,251	+				+0.3
1,128,252	-				+1.8
1,128,252	-				+1.6
1,128,296	+		PFLU_RS05055	0.17	-2.4
1,128,296	+		PFLU_RS05055	0.17	+0.6
1,128,296	+		PFLU_RS05055	0.17	-0.7
1,128,296	+		PFLU_RS05055	0.17	+1.3
1,128,297	-		PFLU_RS05055	0.17	+1.0
1,128,297	-		PFLU_RS05055	0.17	+1.3
1,128,297	-		PFLU_RS05055	0.17	-0.2
1,128,297	-		PFLU_RS05055	0.17	+1.0
1,128,297	-		PFLU_RS05055	0.17	-0.6
1,128,297	-		PFLU_RS05055	0.17	+0.4
1,128,361	+		PFLU_RS05055	0.31	+1.0
1,128,361	+		PFLU_RS05055	0.31	-0.1
1,128,361	+		PFLU_RS05055	0.31	-2.9
1,128,361	+		PFLU_RS05055	0.31	-0.4
1,128,361	+		PFLU_RS05055	0.31	-0.5
1,128,361	+		PFLU_RS05055	0.31	+0.3
1,128,361	+		PFLU_RS05055	0.31	+0.4
1,128,361	+		PFLU_RS05055	0.31	-0.3
1,128,361	+		PFLU_RS05055	0.31	+0.8
1,128,361	+		PFLU_RS05055	0.31	+0.3
1,128,361	+		PFLU_RS05055	0.31	+1.3
1,128,361	+		PFLU_RS05055	0.31	+0.8
1,128,361	+		PFLU_RS05055	0.31	+0.3
1,128,361	+		PFLU_RS05055	0.31	-1.3
1,128,361	+		PFLU_RS05055	0.31	+1.7
1,128,362	-		PFLU_RS05055	0.31	+0.5
1,128,362	-		PFLU_RS05055	0.31	+0.5
1,128,362	-		PFLU_RS05055	0.31	-1.2
1,128,362	-		PFLU_RS05055	0.31	-0.2
1,128,362	-		PFLU_RS05055	0.31	-1.0
1,128,362	-		PFLU_RS05055	0.31	+1.6
1,128,362	-		PFLU_RS05055	0.31	+1.8
1,128,362	-		PFLU_RS05055	0.31	-0.1
1,128,362	-		PFLU_RS05055	0.31	-0.2
1,128,362	-		PFLU_RS05055	0.31	-2.5
1,128,362	-		PFLU_RS05055	0.31	+0.2
1,128,362	-		PFLU_RS05055	0.31	+0.1
1,128,362	-		PFLU_RS05055	0.31	+0.3
1,128,461	+		PFLU_RS05055	0.52	-1.0
1,128,461	+		PFLU_RS05055	0.52	-1.9
1,128,461	+		PFLU_RS05055	0.52	+1.2
1,128,461	+		PFLU_RS05055	0.52	+0.8
1,128,461	+		PFLU_RS05055	0.52	-1.0
1,128,461	+		PFLU_RS05055	0.52	-0.7
1,128,461	+		PFLU_RS05055	0.52	-0.5
1,128,461	+		PFLU_RS05055	0.52	-0.6
1,128,461	+		PFLU_RS05055	0.52	+0.5
1,128,461	+		PFLU_RS05055	0.52	-2.0
1,128,461	+		PFLU_RS05055	0.52	+0.8
1,128,462	-		PFLU_RS05055	0.52	-1.9
1,128,462	-		PFLU_RS05055	0.52	+0.3
1,128,462	-		PFLU_RS05055	0.52	+0.1
1,128,462	-		PFLU_RS05055	0.52	+0.4
1,128,462	-		PFLU_RS05055	0.52	-0.4
1,128,462	-		PFLU_RS05055	0.52	-2.3
1,128,462	-		PFLU_RS05055	0.52	+1.2
1,128,484	+		PFLU_RS05055	0.57	-1.2
1,128,485	-		PFLU_RS05055	0.57	+0.3
1,128,591	+		PFLU_RS05055	0.80	-1.7
1,128,591	+		PFLU_RS05055	0.80	+1.0
1,128,591	+		PFLU_RS05055	0.80	+1.3
1,128,591	+		PFLU_RS05055	0.80	-1.0
1,128,592	-		PFLU_RS05055	0.80	+1.4
1,128,592	-		PFLU_RS05055	0.80	-1.9
1,128,592	-		PFLU_RS05055	0.80	+0.3
1,128,686	+				+0.6
1,128,686	+				-0.7
1,128,686	+				+0.4
1,128,686	+				-0.3
1,128,686	+				+0.1
1,128,687	-				-0.7
1,128,687	-				+0.1
1,128,687	-				+1.8
1,128,731	+				+0.8
1,128,731	+				+2.3
1,128,732	-				-0.2
1,128,732	-				+0.7
1,128,759	+		PFLU_RS05060	0.13	-0.2
1,128,759	+		PFLU_RS05060	0.13	+1.1
1,128,759	+		PFLU_RS05060	0.13	-0.3
1,128,789	+		PFLU_RS05060	0.24	+0.2
1,128,888	+		PFLU_RS05060	0.60	-0.7
1,128,888	+		PFLU_RS05060	0.60	+2.2
1,128,888	+		PFLU_RS05060	0.60	-0.2
1,128,888	+		PFLU_RS05060	0.60	+0.7
1,128,888	+		PFLU_RS05060	0.60	-1.0
1,128,889	-		PFLU_RS05060	0.60	+0.8
1,128,889	-		PFLU_RS05060	0.60	-1.7
1,128,889	-		PFLU_RS05060	0.60	+0.5
1,129,039	+				+1.7
1,129,039	+				-1.5
1,129,040	-				-0.3
1,129,044	+				-0.1
1,129,044	+				+0.5
1,129,044	+				+0.3
1,129,044	+				-0.6
1,129,044	+				+0.4
1,129,044	+				+1.1
1,129,045	-				+0.3
1,129,045	-				-0.2
1,129,045	-				+0.1
1,129,045	-				+0.3
1,129,045	-				-2.6
1,129,045	-				+0.5
1,129,056	+				+1.4
1,129,056	+				+0.7
1,129,056	+				+1.8
1,129,056	+				+0.4
1,129,056	+				-2.2
1,129,056	+				+0.7
1,129,056	+				+1.3
1,129,056	+				+0.8
1,129,056	+				-0.6
1,129,057	-				+0.7
1,129,057	-				-0.2
1,129,057	-				-2.5
1,129,057	-				+0.3
1,129,057	-				-0.7
1,129,057	-				-1.2
1,129,057	-				-2.0
1,129,057	-				+1.0