Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20855

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,770,747	+				+0.3
4,770,757	+				+0.1
4,771,660	+		HSERO_RS20855	0.24	+0.1
4,771,842	-		HSERO_RS20855	0.45	+1.0
4,771,844	+		HSERO_RS20855	0.45	+0.6
4,772,066	+		HSERO_RS20855	0.71	-0.2
4,772,153	+		HSERO_RS20855	0.82	-0.4
4,772,170	+		HSERO_RS20855	0.84	+0.7
4,772,285	-				-1.3
4,772,295	+				-0.3
4,772,463	+				-0.5
4,772,470	-				-0.4
4,772,507	-				+0.1
4,772,633	+		HSERO_RS20860	0.21	+0.0
4,772,641	-		HSERO_RS20860	0.22	+0.7
4,772,641	-		HSERO_RS20860	0.22	+1.0
4,772,754	+		HSERO_RS20860	0.35	+1.0
4,772,762	-		HSERO_RS20860	0.36	+0.5
4,773,007	-		HSERO_RS20860	0.65	-0.2
4,773,017	-		HSERO_RS20860	0.66	+0.7
4,773,158	+		HSERO_RS20860	0.82	-0.1
4,773,158	+		HSERO_RS20860	0.82	-0.3
4,773,209	-		HSERO_RS20860	0.88	-0.7