Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14975

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,400,852	-				+2.0
3,400,852	-		HSERO_RS14970	0.31	+0.9
3,400,865	+		HSERO_RS14970	0.32	+0.8
3,400,865	+		HSERO_RS14970	0.32	+0.5
3,400,896	+		HSERO_RS14970	0.35	+0.7
3,400,955	+		HSERO_RS14970	0.42	-0.2
3,400,986	-		HSERO_RS14970	0.45	+0.6
3,401,174	-		HSERO_RS14970	0.65	+0.7
3,401,222	-		HSERO_RS14970	0.70	+0.8
3,401,238	-		HSERO_RS14970	0.72	+1.1
3,401,312	+				+0.2
3,401,335	+		HSERO_RS14970	0.82	+0.6
3,401,456	+				+0.5
3,401,503	+				+0.4
3,401,785	-		HSERO_RS14975	0.26	+0.3
3,402,076	+		HSERO_RS14975	0.60	+0.6
3,402,134	+		HSERO_RS14975	0.67	+0.5
3,402,135	+		HSERO_RS14975	0.67	+0.8
3,402,202	+		HSERO_RS14975	0.75	+0.2
3,402,221	-		HSERO_RS14975	0.77	+0.6
3,402,236	+				+1.9
3,402,261	-		HSERO_RS14975	0.82	+0.5
3,402,463	+				+0.5
3,402,666	+				+0.2
3,402,693	+				+0.2
3,402,693	+				+0.2
3,402,767	+				+0.0
3,402,858	-				+0.4
3,403,051	-				-0.3
3,403,180	+				-0.0
3,403,192	-				+0.3
3,403,275	+				+0.5
3,403,303	+				+0.1
3,403,308	+				-0.2
3,403,391	+				-0.2