Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04555 and HSERO_RS04560 are separated by 143 nucleotides HSERO_RS04560 and HSERO_RS04565 overlap by 1 nucleotides
HSERO_RS04555: HSERO_RS04555 - capsid protein, at 994,790 to 995,632
_RS04555
HSERO_RS04560: HSERO_RS04560 - terminase, at 995,776 to 997,557
_RS04560
HSERO_RS04565: HSERO_RS04565 - bacteriophage capsid portal protein, at 997,557 to 998,609
_RS04565
Position (kb) 995
996
997
998 Strain fitness (log2 ratio) -1
0
1 at 994.867 kb on + strand at 994.931 kb on + strand, within HSERO_RS04555 at 995.194 kb on - strand, within HSERO_RS04555 at 995.263 kb on + strand, within HSERO_RS04555 at 995.324 kb on + strand, within HSERO_RS04555 at 995.325 kb on + strand, within HSERO_RS04555 at 995.446 kb on - strand, within HSERO_RS04555 at 995.492 kb on - strand, within HSERO_RS04555 at 995.565 kb on - strand at 995.708 kb on + strand at 995.975 kb on + strand, within HSERO_RS04560 at 996.063 kb on + strand, within HSERO_RS04560 at 996.189 kb on + strand, within HSERO_RS04560 at 996.212 kb on - strand, within HSERO_RS04560 at 996.350 kb on - strand, within HSERO_RS04560 at 996.448 kb on - strand, within HSERO_RS04560 at 996.455 kb on - strand, within HSERO_RS04560 at 996.471 kb on + strand, within HSERO_RS04560 at 996.517 kb on + strand, within HSERO_RS04560 at 996.522 kb on + strand, within HSERO_RS04560 at 996.525 kb on - strand, within HSERO_RS04560 at 996.525 kb on - strand, within HSERO_RS04560 at 996.525 kb on - strand, within HSERO_RS04560 at 996.607 kb on - strand, within HSERO_RS04560 at 996.643 kb on + strand, within HSERO_RS04560 at 996.746 kb on - strand, within HSERO_RS04560 at 996.771 kb on + strand, within HSERO_RS04560 at 996.779 kb on - strand, within HSERO_RS04560 at 997.309 kb on + strand, within HSERO_RS04560 at 997.317 kb on - strand, within HSERO_RS04560 at 997.419 kb on - strand at 997.445 kb on + strand at 997.507 kb on - strand at 997.522 kb on + strand at 997.592 kb on - strand at 997.646 kb on - strand at 997.808 kb on + strand, within HSERO_RS04565 at 997.868 kb on - strand, within HSERO_RS04565 at 997.909 kb on - strand, within HSERO_RS04565 at 998.007 kb on + strand, within HSERO_RS04565 at 998.065 kb on + strand, within HSERO_RS04565 at 998.093 kb on - strand, within HSERO_RS04565 at 998.148 kb on + strand, within HSERO_RS04565 at 998.332 kb on + strand, within HSERO_RS04565 at 998.445 kb on - strand, within HSERO_RS04565
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 994,867 + -1.3 994,931 + HSERO_RS04555 0.17 +0.2 995,194 - HSERO_RS04555 0.48 -0.5 995,263 + HSERO_RS04555 0.56 +0.3 995,324 + HSERO_RS04555 0.63 +0.1 995,325 + HSERO_RS04555 0.63 -0.9 995,446 - HSERO_RS04555 0.78 +0.0 995,492 - HSERO_RS04555 0.83 +0.4 995,565 - +0.2 995,708 + -1.0 995,975 + HSERO_RS04560 0.11 -0.2 996,063 + HSERO_RS04560 0.16 -0.1 996,189 + HSERO_RS04560 0.23 +0.4 996,212 - HSERO_RS04560 0.24 -0.2 996,350 - HSERO_RS04560 0.32 +0.9 996,448 - HSERO_RS04560 0.38 -0.1 996,455 - HSERO_RS04560 0.38 -0.1 996,471 + HSERO_RS04560 0.39 -0.1 996,517 + HSERO_RS04560 0.42 +0.1 996,522 + HSERO_RS04560 0.42 -0.4 996,525 - HSERO_RS04560 0.42 +0.1 996,525 - HSERO_RS04560 0.42 +0.6 996,525 - HSERO_RS04560 0.42 +0.1 996,607 - HSERO_RS04560 0.47 -0.0 996,643 + HSERO_RS04560 0.49 +0.4 996,746 - HSERO_RS04560 0.54 -0.3 996,771 + HSERO_RS04560 0.56 +0.5 996,779 - HSERO_RS04560 0.56 +0.1 997,309 + HSERO_RS04560 0.86 +0.5 997,317 - HSERO_RS04560 0.86 +0.7 997,419 - -0.4 997,445 + -0.2 997,507 - -0.6 997,522 + -0.1 997,592 - +0.2 997,646 - -0.1 997,808 + HSERO_RS04565 0.24 -0.5 997,868 - HSERO_RS04565 0.30 -0.1 997,909 - HSERO_RS04565 0.33 -0.2 998,007 + HSERO_RS04565 0.43 -0.2 998,065 + HSERO_RS04565 0.48 -0.7 998,093 - HSERO_RS04565 0.51 -0.1 998,148 + HSERO_RS04565 0.56 -0.0 998,332 + HSERO_RS04565 0.74 +0.3 998,445 - HSERO_RS04565 0.84 +0.4
Or see this region's nucleotide sequence