Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09200

Experiment: LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09195 and BWI76_RS09200 are separated by 10 nucleotidesBWI76_RS09200 and BWI76_RS09205 are separated by 11 nucleotidesBWI76_RS09205 and BWI76_RS09210 are separated by 125 nucleotidesBWI76_RS09210 and BWI76_RS09215 are separated by 32 nucleotides BWI76_RS09195: BWI76_RS09195 - N-acetyltransferase, at 1,940,932 to 1,942,005 _RS09195 BWI76_RS09200: BWI76_RS09200 - hypothetical protein, at 1,942,016 to 1,942,600 _RS09200 BWI76_RS09205: BWI76_RS09205 - phage repressor protein CI, at 1,942,612 to 1,943,172 _RS09205 BWI76_RS09210: BWI76_RS09210 - hypothetical protein, at 1,943,298 to 1,943,519 _RS09210 BWI76_RS09215: BWI76_RS09215 - phage regulatory CII family protein, at 1,943,552 to 1,944,061 _RS09215 Position (kb) 1942 1943Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1941.512 kb on - strandat 1941.567 kb on - strand, within BWI76_RS09195at 1941.882 kb on - strand, within BWI76_RS09195at 1942.098 kb on + strand, within BWI76_RS09200at 1942.282 kb on - strand, within BWI76_RS09200at 1942.420 kb on + strand, within BWI76_RS09200at 1942.420 kb on + strand, within BWI76_RS09200at 1942.420 kb on + strand, within BWI76_RS09200at 1942.420 kb on + strand, within BWI76_RS09200at 1942.428 kb on - strand, within BWI76_RS09200at 1942.428 kb on - strand, within BWI76_RS09200at 1942.430 kb on + strand, within BWI76_RS09200at 1942.430 kb on + strand, within BWI76_RS09200at 1942.438 kb on - strand, within BWI76_RS09200at 1942.438 kb on - strand, within BWI76_RS09200at 1942.438 kb on - strand, within BWI76_RS09200at 1942.535 kb on + strand, within BWI76_RS09200at 1942.535 kb on + strand, within BWI76_RS09200at 1942.543 kb on - strandat 1942.543 kb on - strandat 1942.543 kb on - strandat 1942.543 kb on - strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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1,941,512 - +0.9
1,941,567 - BWI76_RS09195 0.59 -0.7
1,941,882 - BWI76_RS09195 0.88 -0.9
1,942,098 + BWI76_RS09200 0.14 -1.8
1,942,282 - BWI76_RS09200 0.45 -1.9
1,942,420 + BWI76_RS09200 0.69 -1.9
1,942,420 + BWI76_RS09200 0.69 -1.4
1,942,420 + BWI76_RS09200 0.69 -0.7
1,942,420 + BWI76_RS09200 0.69 -2.5
1,942,428 - BWI76_RS09200 0.70 -0.6
1,942,428 - BWI76_RS09200 0.70 -1.7
1,942,430 + BWI76_RS09200 0.71 -2.1
1,942,430 + BWI76_RS09200 0.71 +1.2
1,942,438 - BWI76_RS09200 0.72 -0.5
1,942,438 - BWI76_RS09200 0.72 -2.2
1,942,438 - BWI76_RS09200 0.72 -0.7
1,942,535 + BWI76_RS09200 0.89 +2.3
1,942,535 + BWI76_RS09200 0.89 -0.5
1,942,543 - +0.3
1,942,543 - -0.5
1,942,543 - +1.0
1,942,543 - -0.5
1,942,545 + -0.1
1,942,545 + +0.4
1,942,545 + -1.8
1,942,545 + +1.5
1,942,545 + +0.2
1,942,545 + -1.3
1,942,545 + -0.5
1,942,545 - -0.2
1,942,553 - -1.9
1,942,553 - -0.7
1,942,553 - +0.2
1,942,553 - -1.1
1,942,553 - -0.1
1,942,553 - -3.7
1,942,553 - +0.9
1,942,553 - -1.7
1,942,553 - +0.3
1,942,553 - -0.8
1,942,553 - -0.9
1,942,553 - -0.1
1,942,553 - -1.7
1,942,553 - +0.3
1,942,589 - -1.1

Or see this region's nucleotide sequence