Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5785

Experiment: Nickel (II) chloride 1.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5784 and Pf6N2E2_5785 are separated by 222 nucleotidesPf6N2E2_5785 and Pf6N2E2_5786 are separated by 46 nucleotides Pf6N2E2_5784 - FIG01073969: hypothetical protein, at 6,603,002 to 6,603,790 _5784 Pf6N2E2_5785 - Phosphoserine phosphatase (EC 3.1.3.3), at 6,604,013 to 6,604,666 _5785 Pf6N2E2_5786 - ABC transporter, ATP-binding protein, at 6,604,713 to 6,605,702 _5786 Position (kb) 6604 6605Strain fitness (log2 ratio) -2 -1 0 1at 6603.054 kb on + strandat 6603.055 kb on - strandat 6603.055 kb on - strandat 6603.345 kb on - strand, within Pf6N2E2_5784at 6603.431 kb on + strand, within Pf6N2E2_5784at 6603.433 kb on + strand, within Pf6N2E2_5784at 6603.434 kb on - strand, within Pf6N2E2_5784at 6603.434 kb on - strand, within Pf6N2E2_5784at 6603.434 kb on - strand, within Pf6N2E2_5784at 6603.482 kb on + strand, within Pf6N2E2_5784at 6603.482 kb on + strand, within Pf6N2E2_5784at 6603.483 kb on - strand, within Pf6N2E2_5784at 6603.551 kb on + strand, within Pf6N2E2_5784at 6603.551 kb on + strand, within Pf6N2E2_5784at 6603.552 kb on - strand, within Pf6N2E2_5784at 6603.813 kb on + strandat 6603.813 kb on + strandat 6603.827 kb on + strandat 6604.024 kb on + strandat 6604.025 kb on - strandat 6604.025 kb on - strandat 6604.138 kb on - strand, within Pf6N2E2_5785at 6604.242 kb on + strand, within Pf6N2E2_5785at 6604.243 kb on - strand, within Pf6N2E2_5785at 6604.497 kb on + strand, within Pf6N2E2_5785at 6604.719 kb on + strandat 6604.720 kb on - strandat 6604.800 kb on + strandat 6604.800 kb on + strandat 6604.800 kb on + strandat 6604.800 kb on + strandat 6604.801 kb on - strandat 6604.801 kb on - strandat 6604.993 kb on + strand, within Pf6N2E2_5786at 6604.993 kb on + strand, within Pf6N2E2_5786at 6604.993 kb on + strand, within Pf6N2E2_5786at 6604.994 kb on - strand, within Pf6N2E2_5786at 6604.994 kb on - strand, within Pf6N2E2_5786at 6604.994 kb on - strand, within Pf6N2E2_5786at 6604.994 kb on - strand, within Pf6N2E2_5786at 6604.994 kb on - strand, within Pf6N2E2_5786at 6605.038 kb on + strand, within Pf6N2E2_5786at 6605.038 kb on + strand, within Pf6N2E2_5786at 6605.039 kb on - strand, within Pf6N2E2_5786at 6605.064 kb on + strand, within Pf6N2E2_5786at 6605.065 kb on - strand, within Pf6N2E2_5786at 6605.452 kb on + strand, within Pf6N2E2_5786at 6605.452 kb on + strand, within Pf6N2E2_5786at 6605.453 kb on - strand, within Pf6N2E2_5786at 6605.453 kb on - strand, within Pf6N2E2_5786at 6605.453 kb on - strand, within Pf6N2E2_5786

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM
remove
6,603,054 + +0.1
6,603,055 - -0.2
6,603,055 - +0.1
6,603,345 - Pf6N2E2_5784 0.43 +0.8
6,603,431 + Pf6N2E2_5784 0.54 -0.2
6,603,433 + Pf6N2E2_5784 0.55 -0.6
6,603,434 - Pf6N2E2_5784 0.55 -0.6
6,603,434 - Pf6N2E2_5784 0.55 -1.5
6,603,434 - Pf6N2E2_5784 0.55 -0.6
6,603,482 + Pf6N2E2_5784 0.61 +0.8
6,603,482 + Pf6N2E2_5784 0.61 +0.3
6,603,483 - Pf6N2E2_5784 0.61 -0.2
6,603,551 + Pf6N2E2_5784 0.70 -0.9
6,603,551 + Pf6N2E2_5784 0.70 +0.8
6,603,552 - Pf6N2E2_5784 0.70 +0.5
6,603,813 + +0.4
6,603,813 + -0.1
6,603,827 + -0.1
6,604,024 + -1.0
6,604,025 - -0.5
6,604,025 - -1.5
6,604,138 - Pf6N2E2_5785 0.19 -0.8
6,604,242 + Pf6N2E2_5785 0.35 -2.0
6,604,243 - Pf6N2E2_5785 0.35 +0.8
6,604,497 + Pf6N2E2_5785 0.74 -2.5
6,604,719 + +1.0
6,604,720 - +1.0
6,604,800 + +0.8
6,604,800 + +0.4
6,604,800 + +1.5
6,604,800 + +0.8
6,604,801 - +0.4
6,604,801 - +0.8
6,604,993 + Pf6N2E2_5786 0.28 -0.3
6,604,993 + Pf6N2E2_5786 0.28 +0.7
6,604,993 + Pf6N2E2_5786 0.28 -0.1
6,604,994 - Pf6N2E2_5786 0.28 -0.0
6,604,994 - Pf6N2E2_5786 0.28 -0.8
6,604,994 - Pf6N2E2_5786 0.28 -0.0
6,604,994 - Pf6N2E2_5786 0.28 -0.8
6,604,994 - Pf6N2E2_5786 0.28 -0.6
6,605,038 + Pf6N2E2_5786 0.33 -0.6
6,605,038 + Pf6N2E2_5786 0.33 +1.2
6,605,039 - Pf6N2E2_5786 0.33 +0.4
6,605,064 + Pf6N2E2_5786 0.35 -0.4
6,605,065 - Pf6N2E2_5786 0.36 +0.5
6,605,452 + Pf6N2E2_5786 0.75 -0.2
6,605,452 + Pf6N2E2_5786 0.75 +0.0
6,605,453 - Pf6N2E2_5786 0.75 +0.2
6,605,453 - Pf6N2E2_5786 0.75 +0.8
6,605,453 - Pf6N2E2_5786 0.75 -0.8

Or see this region's nucleotide sequence