Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19430

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,452,995	-				-0.4
4,452,995	-				-2.5
4,453,308	+		HSERO_RS19430	0.42	-0.4
4,453,316	-		HSERO_RS19430	0.44	-0.6
4,453,326	-		HSERO_RS19430	0.45	-0.1
4,453,363	-		HSERO_RS19430	0.51	-0.6
4,453,393	-		HSERO_RS19430	0.55	-0.8
4,453,408	+				+1.1
4,453,410	+		HSERO_RS19430	0.57	-1.0
4,453,418	-		HSERO_RS19430	0.59	-1.1
4,453,497	-		HSERO_RS19430	0.70	-0.3
4,453,625	+		HSERO_RS19430	0.89	-0.3
4,453,650	+				+0.1
4,453,650	+				-0.3
4,453,805	-				-0.3
4,454,112	+				-2.3
4,454,135	+				-0.9
4,454,143	-				-1.3
4,454,143	-				-0.9
4,454,143	-				-1.1
4,454,199	-		HSERO_RS19435	0.11	-0.3
4,454,279	-		HSERO_RS19435	0.16	-0.0
4,454,473	-		HSERO_RS19435	0.29	-1.9
4,454,475	+		HSERO_RS19435	0.29	-1.1
4,454,582	-		HSERO_RS19435	0.37	-1.2