Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01975

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
431,551	-		HSERO_RS01965	0.72	+0.2
431,664	-		HSERO_RS01965	0.80	+0.2
431,664	-		HSERO_RS01965	0.80	+0.2
431,671	+		HSERO_RS01965	0.81	-0.6
431,932	+				-0.0
431,973	+				-0.4
432,252	+		HSERO_RS01970	0.54	-0.3
432,296	-		HSERO_RS01970	0.61	-0.6
432,543	-				+0.0
432,543	-				+0.7
432,543	-				-0.3
432,548	-				-1.0
432,656	+		HSERO_RS01975	0.22	+0.2
432,925	+		HSERO_RS01975	0.66	+0.3
432,933	-		HSERO_RS01975	0.67	+0.1
432,933	-		HSERO_RS01975	0.67	+1.2
433,033	+		HSERO_RS01975	0.84	-0.5
433,040	-		HSERO_RS01975	0.85	-0.3