Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08615

Experiment: LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08610 and BWI76_RS08615 overlap by 7 nucleotidesBWI76_RS08615 and BWI76_RS08620 are separated by 2 nucleotides BWI76_RS08610: BWI76_RS08610 - galactose-1-epimerase, at 1,816,084 to 1,817,127 _RS08610 BWI76_RS08615: BWI76_RS08615 - galactokinase, at 1,817,121 to 1,818,269 _RS08615 BWI76_RS08620: BWI76_RS08620 - galactose-1-phosphate uridylyltransferase, at 1,818,272 to 1,819,318 _RS08620 Position (kb) 1817 1818 1819Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1816.223 kb on + strand, within BWI76_RS08610at 1816.238 kb on - strand, within BWI76_RS08610at 1816.279 kb on - strand, within BWI76_RS08610at 1816.305 kb on - strand, within BWI76_RS08610at 1816.344 kb on - strand, within BWI76_RS08610at 1816.479 kb on - strand, within BWI76_RS08610at 1817.119 kb on + strandat 1817.129 kb on + strandat 1817.309 kb on + strand, within BWI76_RS08615at 1817.583 kb on - strand, within BWI76_RS08615at 1817.583 kb on - strand, within BWI76_RS08615at 1817.737 kb on + strand, within BWI76_RS08615at 1817.997 kb on + strand, within BWI76_RS08615at 1818.842 kb on + strand, within BWI76_RS08620at 1818.920 kb on + strand, within BWI76_RS08620at 1818.974 kb on - strand, within BWI76_RS08620at 1818.984 kb on - strand, within BWI76_RS08620at 1819.150 kb on - strand, within BWI76_RS08620at 1819.150 kb on - strand, within BWI76_RS08620

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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1,816,223 + BWI76_RS08610 0.13 +0.5
1,816,238 - BWI76_RS08610 0.15 +0.1
1,816,279 - BWI76_RS08610 0.19 -0.6
1,816,305 - BWI76_RS08610 0.21 -0.1
1,816,344 - BWI76_RS08610 0.25 +0.9
1,816,479 - BWI76_RS08610 0.38 +0.3
1,817,119 + +0.7
1,817,129 + -0.0
1,817,309 + BWI76_RS08615 0.16 +0.9
1,817,583 - BWI76_RS08615 0.40 +4.5
1,817,583 - BWI76_RS08615 0.40 +0.6
1,817,737 + BWI76_RS08615 0.54 -1.1
1,817,997 + BWI76_RS08615 0.76 +0.7
1,818,842 + BWI76_RS08620 0.54 -0.6
1,818,920 + BWI76_RS08620 0.62 +0.5
1,818,974 - BWI76_RS08620 0.67 +0.8
1,818,984 - BWI76_RS08620 0.68 -3.2
1,819,150 - BWI76_RS08620 0.84 +0.3
1,819,150 - BWI76_RS08620 0.84 +1.4

Or see this region's nucleotide sequence