Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08005

Experiment: LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS08000 and BWI76_RS08005 are separated by 186 nucleotidesBWI76_RS08005 and BWI76_RS08010 are separated by 137 nucleotidesBWI76_RS08010 and BWI76_RS08015 are separated by 91 nucleotides BWI76_RS08000: BWI76_RS08000 - lipoyl synthase, at 1,696,223 to 1,697,188 _RS08000 BWI76_RS08005: BWI76_RS08005 - transcriptional regulator, at 1,697,375 to 1,698,328 _RS08005 BWI76_RS08010: BWI76_RS08010 - octanoyltransferase, at 1,698,466 to 1,699,110 _RS08010 BWI76_RS08015: BWI76_RS08015 - hypothetical protein, at 1,699,202 to 1,699,465 _RS08015 Position (kb) 1697 1698 1699Strain fitness (log2 ratio) -1 0 1 2at 1697.308 kb on - strandat 1697.575 kb on - strand, within BWI76_RS08005at 1697.970 kb on + strand, within BWI76_RS08005at 1698.083 kb on + strand, within BWI76_RS08005at 1698.091 kb on - strand, within BWI76_RS08005at 1698.140 kb on + strand, within BWI76_RS08005at 1698.211 kb on - strand, within BWI76_RS08005at 1698.357 kb on + strandat 1698.357 kb on - strandat 1698.365 kb on - strandat 1698.459 kb on - strandat 1699.151 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
remove
1,697,308 - -0.9
1,697,575 - BWI76_RS08005 0.21 -0.7
1,697,970 + BWI76_RS08005 0.62 +2.2
1,698,083 + BWI76_RS08005 0.74 +0.1
1,698,091 - BWI76_RS08005 0.75 -0.1
1,698,140 + BWI76_RS08005 0.80 +0.2
1,698,211 - BWI76_RS08005 0.88 -0.3
1,698,357 + -0.9
1,698,357 - +0.5
1,698,365 - -1.5
1,698,459 - -1.0
1,699,151 + +0.5

Or see this region's nucleotide sequence