Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01905

Experiment: LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01900 and BWI76_RS01905 are separated by 140 nucleotidesBWI76_RS01905 and BWI76_RS01910 are separated by 177 nucleotides BWI76_RS01900: BWI76_RS01900 - tRNA-dihydrouridine synthase A, at 386,840 to 387,835 _RS01900 BWI76_RS01905: BWI76_RS01905 - envelope stress response protein PspG, at 387,976 to 388,218 _RS01905 BWI76_RS01910: BWI76_RS01910 - quinone oxidoreductase, at 388,396 to 389,379 _RS01910 Position (kb) 387 388 389Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 387.444 kb on - strand, within BWI76_RS01900at 387.475 kb on - strand, within BWI76_RS01900at 387.505 kb on + strand, within BWI76_RS01900at 387.657 kb on + strand, within BWI76_RS01900at 387.675 kb on + strand, within BWI76_RS01900at 387.795 kb on + strandat 387.911 kb on + strandat 388.065 kb on - strand, within BWI76_RS01905at 388.072 kb on + strand, within BWI76_RS01905at 388.292 kb on + strandat 388.337 kb on - strandat 388.337 kb on - strandat 388.379 kb on - strandat 388.380 kb on - strandat 388.677 kb on - strand, within BWI76_RS01910at 388.735 kb on + strand, within BWI76_RS01910at 388.795 kb on - strand, within BWI76_RS01910at 388.859 kb on + strand, within BWI76_RS01910at 388.905 kb on + strand, within BWI76_RS01910at 388.917 kb on + strand, within BWI76_RS01910at 388.925 kb on - strand, within BWI76_RS01910at 388.988 kb on + strand, within BWI76_RS01910at 388.997 kb on + strand, within BWI76_RS01910at 388.998 kb on - strand, within BWI76_RS01910at 388.998 kb on - strand, within BWI76_RS01910at 389.098 kb on - strand, within BWI76_RS01910at 389.107 kb on - strand, within BWI76_RS01910at 389.132 kb on - strand, within BWI76_RS01910

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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387,444 - BWI76_RS01900 0.61 +0.8
387,475 - BWI76_RS01900 0.64 -0.6
387,505 + BWI76_RS01900 0.67 -0.2
387,657 + BWI76_RS01900 0.82 +0.2
387,675 + BWI76_RS01900 0.84 -3.5
387,795 + +0.2
387,911 + +0.6
388,065 - BWI76_RS01905 0.37 -3.3
388,072 + BWI76_RS01905 0.40 -1.1
388,292 + -4.0
388,337 - +0.4
388,337 - +0.4
388,379 - +0.0
388,380 - +0.1
388,677 - BWI76_RS01910 0.29 +0.5
388,735 + BWI76_RS01910 0.34 -0.1
388,795 - BWI76_RS01910 0.41 -0.4
388,859 + BWI76_RS01910 0.47 +0.6
388,905 + BWI76_RS01910 0.52 -1.8
388,917 + BWI76_RS01910 0.53 -2.5
388,925 - BWI76_RS01910 0.54 +0.9
388,988 + BWI76_RS01910 0.60 -3.4
388,997 + BWI76_RS01910 0.61 +0.3
388,998 - BWI76_RS01910 0.61 -0.4
388,998 - BWI76_RS01910 0.61 -0.4
389,098 - BWI76_RS01910 0.71 +0.5
389,107 - BWI76_RS01910 0.72 +0.3
389,132 - BWI76_RS01910 0.75 +1.2

Or see this region's nucleotide sequence