Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16745

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,833,841	-		HSERO_RS16740	0.48	+0.0
3,833,877	+		HSERO_RS16740	0.50	+0.6
3,833,935	+		HSERO_RS16740	0.54	+0.2
3,833,958	-		HSERO_RS16740	0.55	-0.1
3,833,998	-		HSERO_RS16740	0.57	-0.1
3,834,083	+		HSERO_RS16740	0.62	+0.8
3,834,317	-		HSERO_RS16740	0.75	+0.1
3,834,319	+		HSERO_RS16740	0.75	+1.7
3,834,332	+		HSERO_RS16740	0.76	+0.2
3,834,486	-		HSERO_RS16740	0.85	-0.2
3,834,558	+		HSERO_RS16740	0.89	+0.2
3,834,612	-				-0.4
3,834,675	+				+0.2
3,834,766	+				-0.0
3,834,774	-				+0.2
3,834,929	+		HSERO_RS16745	0.23	-0.8
3,834,956	+		HSERO_RS16745	0.27	-0.1
3,835,030	+		HSERO_RS16745	0.37	+0.4
3,835,126	-		HSERO_RS16745	0.50	-0.2
3,835,137	+		HSERO_RS16745	0.52	+0.4
3,835,182	-		HSERO_RS16745	0.58	+0.3
3,835,183	-		HSERO_RS16745	0.58	-0.2
3,835,271	-		HSERO_RS16745	0.70	+0.5
3,835,636	-				+1.7
3,835,655	+				+0.1
3,835,668	-				+0.9
3,835,765	-		HSERO_RS16750	0.14	+0.0
3,835,860	-		HSERO_RS16750	0.26	-0.2
3,835,906	-		HSERO_RS16750	0.32	+0.4
3,835,911	-		HSERO_RS16750	0.33	+0.2
3,835,947	-		HSERO_RS16750	0.38	+0.1
3,836,066	+		HSERO_RS16750	0.53	-0.4
3,836,087	+		HSERO_RS16750	0.56	+1.1
3,836,095	-		HSERO_RS16750	0.57	+0.2
3,836,097	+		HSERO_RS16750	0.57	-0.5
3,836,097	+		HSERO_RS16750	0.57	-0.1
3,836,190	+		HSERO_RS16750	0.69	-0.6
3,836,247	+		HSERO_RS16750	0.77	-0.0
3,836,407	+				+0.4
3,836,440	-				+0.9
3,836,476	+				-0.9