Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13405

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,051,551	-		HSERO_RS13400	0.50	-0.1
3,051,583	+		HSERO_RS13400	0.52	-0.3
3,052,068	+		HSERO_RS13400	0.82	-0.2
3,052,203	-				-0.6
3,052,241	-				+0.0
3,052,288	+				-0.0
3,052,327	+				-0.4
3,052,444	+				+0.2
3,052,600	-				-0.1
3,052,600	-				-0.1
3,052,600	-				-0.9
3,052,600	-				-0.7
3,052,617	-		HSERO_RS13405	0.10	+0.1
3,052,628	+		HSERO_RS13405	0.11	-1.1
3,052,913	+		HSERO_RS13405	0.35	-0.6
3,052,921	-		HSERO_RS13405	0.35	-0.2
3,053,159	+		HSERO_RS13405	0.55	-1.0
3,053,304	+		HSERO_RS13405	0.67	-0.2
3,053,313	+		HSERO_RS13405	0.67	-0.4
3,053,489	+		HSERO_RS13405	0.82	-0.7
3,053,574	+		HSERO_RS13405	0.89	-0.7
3,053,884	-		HSERO_RS13410	0.60	-0.3
3,053,917	+		HSERO_RS13410	0.78	-0.2
3,053,939	-				-0.4
3,054,210	+				+0.9
3,054,341	-				+0.3
3,054,506	+				-0.3