Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05635

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,277,648	+				-0.6
1,277,770	-				-0.0
1,277,787	+				+0.1
1,277,795	-				+1.4
1,277,933	+				-0.2
1,278,059	+		HSERO_RS05630	0.27	-0.2
1,278,393	-				-0.3
1,278,495	-				+0.0
1,278,559	-				+0.1
1,278,566	+				-0.0
1,278,573	+				+0.0
1,278,592	+				+0.2
1,278,615	+				+0.3
1,278,632	+				-1.1
1,278,646	+				+0.1
1,278,652	-				+0.1
1,278,652	-				-0.1
1,278,670	+				+0.0
1,278,715	-		HSERO_RS05635	0.11	-0.3
1,278,842	-		HSERO_RS05635	0.20	+0.3
1,278,970	-		HSERO_RS05635	0.30	+0.3
1,278,980	+		HSERO_RS05635	0.30	+0.5
1,278,980	+		HSERO_RS05635	0.30	+0.3
1,278,980	+		HSERO_RS05635	0.30	-0.2
1,278,983	-		HSERO_RS05635	0.31	-0.2
1,278,988	-		HSERO_RS05635	0.31	+0.6
1,279,089	+		HSERO_RS05635	0.38	+0.2
1,279,096	-		HSERO_RS05635	0.39	+0.1
1,279,209	+		HSERO_RS05635	0.47	-0.8
1,279,224	+		HSERO_RS05635	0.48	+0.1
1,279,328	+		HSERO_RS05635	0.56	+0.1
1,279,392	-		HSERO_RS05635	0.60	+0.9
1,279,413	-		HSERO_RS05635	0.62	+0.4
1,279,560	+		HSERO_RS05635	0.72	+0.4
1,279,600	+		HSERO_RS05635	0.75	-0.1
1,279,677	-		HSERO_RS05635	0.81	+0.1
1,279,745	+		HSERO_RS05635	0.86	+0.1
1,279,753	-		HSERO_RS05635	0.86	+0.5
1,279,830	-				-0.1
1,279,846	+				+0.2
1,279,966	+				+0.1
1,279,966	+				-0.2
1,279,974	-				+0.1
1,279,974	-				+1.1
1,280,117	+				-0.1
1,280,125	-				-0.0
1,280,157	+				-0.3
1,280,223	-		HSERO_RS05640	0.12	-1.1
1,280,351	+		HSERO_RS05640	0.26	-0.1
1,280,429	+		HSERO_RS05640	0.34	-0.9
1,280,579	+		HSERO_RS05640	0.51	-0.4
1,280,685	-		HSERO_RS05640	0.63	-0.8
1,280,819	-		HSERO_RS05640	0.78	-0.2
1,280,846	+		HSERO_RS05640	0.81	+0.3