Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16890

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,866,138	+		HSERO_RS16885	0.87	+0.4
3,866,573	+				-0.7
3,866,573	+				+0.1
3,866,638	-				+0.3
3,866,638	-				+0.2
3,866,650	-				+0.0
3,866,650	-				+0.3
3,866,650	-				+0.1
3,866,726	-		HSERO_RS16890	0.14	+0.3
3,866,728	+		HSERO_RS16890	0.14	+0.2
3,866,774	-		HSERO_RS16890	0.25	+0.1
3,866,901	-		HSERO_RS16890	0.55	+0.9
3,866,959	+		HSERO_RS16890	0.69	+1.2
3,867,600	-		HSERO_RS16895	0.33	-0.1
3,867,600	-		HSERO_RS16895	0.33	-0.0
3,867,662	-		HSERO_RS16895	0.39	+0.5
3,867,732	+		HSERO_RS16895	0.46	-0.2
3,867,876	+		HSERO_RS16895	0.60	-0.2
3,867,894	+		HSERO_RS16895	0.62	+0.8
3,867,939	+		HSERO_RS16895	0.66	+0.1
3,867,939	+				-0.6
3,867,957	-		HSERO_RS16895	0.68	-0.2