Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01975

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01965 and HSERO_RS01970 overlap by 4 nucleotidesHSERO_RS01970 and HSERO_RS01975 overlap by 1 nucleotidesHSERO_RS01975 and HSERO_RS01980 are separated by 16 nucleotides HSERO_RS01965: HSERO_RS01965 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 430,556 to 431,938 _RS01965 HSERO_RS01970: HSERO_RS01970 - esterase, at 431,935 to 432,525 _RS01970 HSERO_RS01975: HSERO_RS01975 - 4-hydroxybenzoate synthetase, at 432,525 to 433,130 _RS01975 HSERO_RS01980: HSERO_RS01980 - ribonuclease II, at 433,147 to 435,201 _RS01980 Position (kb) 432 433 434Strain fitness (log2 ratio) -1 0 1at 431.551 kb on - strand, within HSERO_RS01965at 431.664 kb on - strand, within HSERO_RS01965at 431.664 kb on - strand, within HSERO_RS01965at 431.671 kb on + strand, within HSERO_RS01965at 431.932 kb on + strandat 431.973 kb on + strandat 432.252 kb on + strand, within HSERO_RS01970at 432.296 kb on - strand, within HSERO_RS01970at 432.543 kb on - strandat 432.543 kb on - strandat 432.543 kb on - strandat 432.548 kb on - strandat 432.656 kb on + strand, within HSERO_RS01975at 432.925 kb on + strand, within HSERO_RS01975at 432.933 kb on - strand, within HSERO_RS01975at 432.933 kb on - strand, within HSERO_RS01975at 433.033 kb on + strand, within HSERO_RS01975at 433.040 kb on - strand, within HSERO_RS01975

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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431,551 - HSERO_RS01965 0.72 -1.4
431,664 - HSERO_RS01965 0.80 -0.4
431,664 - HSERO_RS01965 0.80 -1.4
431,671 + HSERO_RS01965 0.81 -0.9
431,932 + +0.7
431,973 + -0.4
432,252 + HSERO_RS01970 0.54 -0.3
432,296 - HSERO_RS01970 0.61 -0.9
432,543 - -0.0
432,543 - -0.1
432,543 - -1.2
432,548 - +0.0
432,656 + HSERO_RS01975 0.22 +0.0
432,925 + HSERO_RS01975 0.66 -0.2
432,933 - HSERO_RS01975 0.67 -0.0
432,933 - HSERO_RS01975 0.67 +0.0
433,033 + HSERO_RS01975 0.84 -0.5
433,040 - HSERO_RS01975 0.85 +0.0

Or see this region's nucleotide sequence