Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00435

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS00430 and HSERO_RS00435 are separated by 38 nucleotidesHSERO_RS00435 and HSERO_RS00440 are separated by 26 nucleotidesHSERO_RS00440 and HSERO_RS00445 are separated by 53 nucleotides HSERO_RS00430: HSERO_RS00430 - glutamate--cysteine ligase, at 101,286 to 102,587 _RS00430 HSERO_RS00435: HSERO_RS00435 - glutathione synthetase, at 102,626 to 103,576 _RS00435 HSERO_RS00440: HSERO_RS00440 - PTS fructose transporter subunit IIA, at 103,603 to 104,079 _RS00440 HSERO_RS00445: HSERO_RS00445 - phosphocarrier protein HPr, at 104,133 to 104,402 _RS00445 Position (kb) 102 103 104Strain fitness (log2 ratio) -2 -1 0 1at 101.739 kb on - strand, within HSERO_RS00430at 101.773 kb on + strand, within HSERO_RS00430at 102.126 kb on + strand, within HSERO_RS00430at 102.256 kb on + strand, within HSERO_RS00430at 102.559 kb on + strandat 102.608 kb on + strandat 102.613 kb on - strandat 102.615 kb on + strandat 102.616 kb on - strandat 102.661 kb on + strandat 102.843 kb on + strand, within HSERO_RS00435at 102.843 kb on + strand, within HSERO_RS00435at 103.248 kb on + strand, within HSERO_RS00435at 103.249 kb on - strand, within HSERO_RS00435at 103.455 kb on + strand, within HSERO_RS00435at 103.580 kb on - strandat 103.605 kb on + strandat 104.335 kb on + strand, within HSERO_RS00445at 104.460 kb on - strandat 104.529 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
remove
101,739 - HSERO_RS00430 0.35 -1.4
101,773 + HSERO_RS00430 0.37 +0.2
102,126 + HSERO_RS00430 0.65 +0.5
102,256 + HSERO_RS00430 0.75 -0.6
102,559 + -0.1
102,608 + -0.3
102,613 - -0.6
102,615 + -0.4
102,616 - -0.3
102,661 + -1.3
102,843 + HSERO_RS00435 0.23 -2.1
102,843 + HSERO_RS00435 0.23 -1.2
103,248 + HSERO_RS00435 0.65 -2.3
103,249 - HSERO_RS00435 0.66 -2.0
103,455 + HSERO_RS00435 0.87 -0.6
103,580 - -0.2
103,605 + -0.4
104,335 + HSERO_RS00445 0.75 +0.0
104,460 - -0.8
104,529 + +0.2

Or see this region's nucleotide sequence