Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12115

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,751,055	-		HSERO_RS12110	0.43	-0.6
2,751,112	-		HSERO_RS12110	0.49	+0.6
2,751,196	+		HSERO_RS12110	0.57	-0.5
2,751,408	-		HSERO_RS12110	0.79	+0.2
2,751,418	+		HSERO_RS12110	0.80	+0.2
2,751,606	+				-0.7
2,751,663	-				+0.5
2,751,967	-		HSERO_RS12115	0.20	+0.0
2,752,266	+		HSERO_RS12115	0.46	+0.5
2,752,314	-		HSERO_RS12115	0.51	-0.2
2,752,334	-		HSERO_RS12115	0.52	+0.1
2,752,604	-		HSERO_RS12115	0.76	+0.6
2,752,770	+				-0.6
2,752,894	+				+0.9
2,752,923	-				-0.2
2,752,928	-				+0.6
2,753,022	+		HSERO_RS12120	0.19	+0.0
2,753,040	+		HSERO_RS12120	0.21	-0.1
2,753,076	-		HSERO_RS12120	0.25	+0.0
2,753,117	-		HSERO_RS12120	0.30	+0.1
2,753,291	+		HSERO_RS12120	0.52	+1.4
2,753,506	-		HSERO_RS12120	0.79	+0.1
2,753,534	+		HSERO_RS12120	0.83	-0.0
2,753,534	+		HSERO_RS12120	0.83	-0.5
2,753,542	-		HSERO_RS12120	0.84	-0.8
2,753,816	+				+0.1