Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10550

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,373,343	+		HSERO_RS10545	0.82	+0.3
2,373,348	+		HSERO_RS10545	0.82	+0.9
2,373,351	-				+0.1
2,373,471	-		HSERO_RS10545	0.87	-0.2
2,373,524	+		HSERO_RS10545	0.89	+0.3
2,373,666	+				+0.5
2,373,770	+				-0.3
2,373,776	+				-0.2
2,373,869	+				-0.3
2,373,874	+				-1.2
2,373,898	-				-0.4
2,374,145	-				+1.2
2,374,257	+				-1.7
2,374,345	+				-0.4
2,374,411	+				+0.3
2,374,465	+				-0.6
2,374,466	-				+1.3
2,374,801	-		HSERO_RS10550	0.29	-0.4
2,375,108	-		HSERO_RS10550	0.47	-0.9
2,375,326	+		HSERO_RS10550	0.60	-0.7
2,375,357	+		HSERO_RS10550	0.61	-0.3
2,375,398	-		HSERO_RS10550	0.64	-0.5
2,375,442	+		HSERO_RS10550	0.66	+0.0
2,375,517	-		HSERO_RS10550	0.71	-0.5
2,375,548	+		HSERO_RS10550	0.72	-0.2
2,375,551	+		HSERO_RS10550	0.73	-0.1
2,375,667	-		HSERO_RS10550	0.79	-0.1
2,375,698	+		HSERO_RS10550	0.81	+0.1
2,376,010	+				-0.0
2,376,037	+				+0.9
2,376,066	+				-0.2
2,376,226	-		HSERO_RS10555	0.35	-0.3
2,376,236	-		HSERO_RS10555	0.37	+0.7
2,376,412	+		HSERO_RS10555	0.73	-0.2
2,376,562	-				+0.4