Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00530 and HSERO_RS00535 are separated by 331 nucleotides HSERO_RS00535 and HSERO_RS00540 are separated by 28 nucleotides
HSERO_RS00530: HSERO_RS00530 - DNA-directed RNA polymerase subunit beta', at 120,045 to 124,286
_RS00530
HSERO_RS00535: HSERO_RS00535 - TonB-dependent receptor, at 124,618 to 126,906
_RS00535
HSERO_RS00540: HSERO_RS00540 - hemin transporter, at 126,935 to 128,080
_RS00540
Position (kb) 124
125
126
127 Strain fitness (log2 ratio) -1
0
1
2 at 124.405 kb on + strand at 124.405 kb on + strand at 124.507 kb on + strand at 124.586 kb on + strand at 124.725 kb on - strand at 124.738 kb on - strand at 125.184 kb on - strand, within HSERO_RS00535 at 125.184 kb on - strand, within HSERO_RS00535 at 125.231 kb on - strand, within HSERO_RS00535 at 125.407 kb on + strand, within HSERO_RS00535 at 125.462 kb on - strand, within HSERO_RS00535 at 125.462 kb on - strand, within HSERO_RS00535 at 125.489 kb on + strand, within HSERO_RS00535 at 125.510 kb on + strand, within HSERO_RS00535 at 125.510 kb on + strand, within HSERO_RS00535 at 125.520 kb on + strand, within HSERO_RS00535 at 125.550 kb on + strand, within HSERO_RS00535 at 125.552 kb on + strand at 125.588 kb on + strand, within HSERO_RS00535 at 125.613 kb on - strand, within HSERO_RS00535 at 125.660 kb on - strand at 125.707 kb on + strand, within HSERO_RS00535 at 126.020 kb on + strand, within HSERO_RS00535 at 126.042 kb on - strand, within HSERO_RS00535 at 126.166 kb on - strand, within HSERO_RS00535 at 126.514 kb on - strand, within HSERO_RS00535 at 126.517 kb on + strand, within HSERO_RS00535 at 126.531 kb on - strand, within HSERO_RS00535 at 126.603 kb on - strand, within HSERO_RS00535 at 126.640 kb on + strand, within HSERO_RS00535 at 126.642 kb on + strand, within HSERO_RS00535 at 126.650 kb on - strand, within HSERO_RS00535 at 126.731 kb on + strand at 126.739 kb on - strand at 126.851 kb on - strand at 126.940 kb on + strand at 127.063 kb on - strand, within HSERO_RS00540 at 127.296 kb on - strand, within HSERO_RS00540 at 127.618 kb on - strand, within HSERO_RS00540 at 127.633 kb on - strand, within HSERO_RS00540 at 127.635 kb on - strand, within HSERO_RS00540 at 127.811 kb on + strand, within HSERO_RS00540 at 127.858 kb on - strand, within HSERO_RS00540
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 124,405 + +0.1 124,405 + +0.3 124,507 + +0.0 124,586 + -0.9 124,725 - +0.2 124,738 - +0.3 125,184 - HSERO_RS00535 0.25 +0.3 125,184 - HSERO_RS00535 0.25 +0.2 125,231 - HSERO_RS00535 0.27 -0.1 125,407 + HSERO_RS00535 0.34 +0.2 125,462 - HSERO_RS00535 0.37 -0.0 125,462 - HSERO_RS00535 0.37 -0.6 125,489 + HSERO_RS00535 0.38 -0.5 125,510 + HSERO_RS00535 0.39 +0.6 125,510 + HSERO_RS00535 0.39 +0.7 125,520 + HSERO_RS00535 0.39 +0.4 125,550 + HSERO_RS00535 0.41 -0.3 125,552 + +0.0 125,588 + HSERO_RS00535 0.42 -0.8 125,613 - HSERO_RS00535 0.43 -0.2 125,660 - -1.4 125,707 + HSERO_RS00535 0.48 -1.2 126,020 + HSERO_RS00535 0.61 +0.4 126,042 - HSERO_RS00535 0.62 -0.6 126,166 - HSERO_RS00535 0.68 +0.1 126,514 - HSERO_RS00535 0.83 -0.2 126,517 + HSERO_RS00535 0.83 -0.4 126,531 - HSERO_RS00535 0.84 -0.7 126,603 - HSERO_RS00535 0.87 -0.6 126,640 + HSERO_RS00535 0.88 -0.9 126,642 + HSERO_RS00535 0.88 -0.4 126,650 - HSERO_RS00535 0.89 +0.1 126,731 + -0.1 126,739 - +2.3 126,851 - -0.5 126,940 + -0.3 127,063 - HSERO_RS00540 0.11 -1.3 127,296 - HSERO_RS00540 0.32 -1.2 127,618 - HSERO_RS00540 0.60 -0.7 127,633 - HSERO_RS00540 0.61 +0.1 127,635 - HSERO_RS00540 0.61 -0.1 127,811 + HSERO_RS00540 0.76 -0.5 127,858 - HSERO_RS00540 0.81 +0.2
Or see this region's nucleotide sequence