Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06520

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,482,624	-		HSERO_RS06515	0.67	-0.0
1,482,624	-		HSERO_RS06515	0.67	+0.0
1,482,801	+		HSERO_RS06515	0.74	+1.2
1,483,014	-		HSERO_RS06515	0.81	+0.8
1,483,029	-				-0.7
1,483,259	-		HSERO_RS06515	0.90	-0.5
1,483,412	-				+0.7
1,483,684	+				+0.7
1,483,823	+		HSERO_RS06520	0.14	+0.8
1,483,827	+		HSERO_RS06520	0.14	-1.0
1,483,885	-		HSERO_RS06520	0.18	+0.1
1,483,926	-		HSERO_RS06520	0.20	+0.0
1,483,944	+		HSERO_RS06520	0.21	-0.4
1,484,154	-		HSERO_RS06520	0.34	+0.0
1,484,190	-		HSERO_RS06520	0.36	+1.3
1,484,235	-		HSERO_RS06520	0.38	-0.0
1,484,256	+		HSERO_RS06520	0.39	-0.3
1,484,264	-		HSERO_RS06520	0.40	+0.1
1,484,338	-		HSERO_RS06520	0.44	+0.1
1,484,358	+		HSERO_RS06520	0.45	-0.0
1,484,378	+		HSERO_RS06520	0.47	+0.2
1,484,550	-		HSERO_RS06520	0.57	+0.8
1,484,573	+		HSERO_RS06520	0.58	+0.3
1,484,581	-		HSERO_RS06520	0.59	+0.0
1,484,608	-		HSERO_RS06520	0.60	-0.2
1,484,623	-		HSERO_RS06520	0.61	-0.4
1,484,625	+		HSERO_RS06520	0.61	-0.3
1,484,625	+		HSERO_RS06520	0.61	+0.9
1,484,625	+		HSERO_RS06520	0.61	+0.4
1,484,625	+		HSERO_RS06520	0.61	+0.5
1,484,633	-		HSERO_RS06520	0.62	-0.7
1,484,659	-		HSERO_RS06520	0.63	+0.1
1,484,777	+				-0.5
1,484,816	+		HSERO_RS06520	0.72	+0.2
1,484,824	-		HSERO_RS06520	0.73	+0.0
1,484,824	-		HSERO_RS06520	0.73	+0.2
1,484,824	-		HSERO_RS06520	0.73	+0.0
1,484,824	-		HSERO_RS06520	0.73	-0.0
1,484,858	-		HSERO_RS06520	0.75	-0.2
1,484,993	-		HSERO_RS06520	0.83	+0.1
1,485,059	-		HSERO_RS06520	0.87	-0.0
1,485,308	-				-0.0
1,485,354	+				+0.6
1,485,459	+				-0.7
1,485,631	+				-0.5
1,485,667	+				-0.1
1,485,675	-				-0.0
1,485,802	-				+0.1
1,485,826	+				+0.1
1,485,906	+		HSERO_RS06525	0.15	+0.3
1,485,940	+		HSERO_RS06525	0.19	-0.1
1,485,964	+		HSERO_RS06525	0.22	+0.9
1,486,000	+				-0.2
1,486,124	+		HSERO_RS06525	0.42	+0.2
1,486,192	-		HSERO_RS06525	0.51	+0.1
1,486,198	-		HSERO_RS06525	0.52	+0.4
1,486,228	+		HSERO_RS06525	0.56	+0.1