Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00415 and HSERO_RS00420 are separated by 12 nucleotides HSERO_RS00420 and HSERO_RS00425 are separated by 15 nucleotides HSERO_RS00425 and HSERO_RS00430 are separated by 347 nucleotides
HSERO_RS00415: HSERO_RS00415 - hypothetical protein, at 98,251 to 99,039
_RS00415
HSERO_RS00420: HSERO_RS00420 - nitrogen regulatory protein P-II 1, at 99,052 to 99,390
_RS00420
HSERO_RS00425: HSERO_RS00425 - ammonia channel protein, at 99,406 to 100,938
_RS00425
HSERO_RS00430: HSERO_RS00430 - glutamate--cysteine ligase, at 101,286 to 102,587
_RS00430
Position (kb) 99
100
101 Strain fitness (log2 ratio) -1
0
1
2
3 at 98.444 kb on - strand, within HSERO_RS00415 at 98.500 kb on + strand, within HSERO_RS00415 at 98.607 kb on + strand, within HSERO_RS00415 at 98.620 kb on - strand, within HSERO_RS00415 at 98.630 kb on - strand, within HSERO_RS00415 at 98.630 kb on - strand, within HSERO_RS00415 at 98.809 kb on - strand, within HSERO_RS00415 at 98.835 kb on + strand, within HSERO_RS00415 at 98.859 kb on + strand, within HSERO_RS00415 at 98.912 kb on + strand, within HSERO_RS00415 at 98.920 kb on - strand, within HSERO_RS00415 at 98.926 kb on - strand at 98.928 kb on + strand, within HSERO_RS00415 at 99.055 kb on + strand at 99.058 kb on - strand at 99.058 kb on - strand at 99.393 kb on - strand at 99.711 kb on + strand, within HSERO_RS00425 at 99.711 kb on + strand, within HSERO_RS00425 at 99.719 kb on - strand, within HSERO_RS00425 at 99.719 kb on - strand, within HSERO_RS00425 at 99.729 kb on - strand, within HSERO_RS00425 at 99.884 kb on - strand, within HSERO_RS00425 at 99.979 kb on - strand, within HSERO_RS00425 at 100.173 kb on + strand, within HSERO_RS00425 at 100.208 kb on - strand, within HSERO_RS00425 at 100.237 kb on - strand, within HSERO_RS00425 at 100.378 kb on + strand, within HSERO_RS00425 at 100.433 kb on - strand, within HSERO_RS00425 at 100.616 kb on + strand, within HSERO_RS00425 at 100.675 kb on + strand, within HSERO_RS00425 at 100.675 kb on + strand, within HSERO_RS00425 at 100.773 kb on + strand, within HSERO_RS00425 at 100.793 kb on - strand at 100.795 kb on + strand at 100.795 kb on + strand at 100.905 kb on - strand at 100.940 kb on - strand at 100.970 kb on - strand at 101.072 kb on + strand at 101.739 kb on - strand, within HSERO_RS00430 at 101.773 kb on + strand, within HSERO_RS00430
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 98,444 - HSERO_RS00415 0.24 -0.5 98,500 + HSERO_RS00415 0.32 -0.3 98,607 + HSERO_RS00415 0.45 +0.3 98,620 - HSERO_RS00415 0.47 +0.2 98,630 - HSERO_RS00415 0.48 -0.5 98,630 - HSERO_RS00415 0.48 -0.3 98,809 - HSERO_RS00415 0.71 -0.5 98,835 + HSERO_RS00415 0.74 +0.6 98,859 + HSERO_RS00415 0.77 +0.1 98,912 + HSERO_RS00415 0.84 -0.7 98,920 - HSERO_RS00415 0.85 +0.2 98,926 - +0.5 98,928 + HSERO_RS00415 0.86 +0.0 99,055 + -1.5 99,058 - +1.0 99,058 - -0.3 99,393 - +0.3 99,711 + HSERO_RS00425 0.20 +0.2 99,711 + HSERO_RS00425 0.20 -0.6 99,719 - HSERO_RS00425 0.20 -0.3 99,719 - HSERO_RS00425 0.20 -0.3 99,729 - HSERO_RS00425 0.21 -1.0 99,884 - HSERO_RS00425 0.31 +0.4 99,979 - HSERO_RS00425 0.37 -0.4 100,173 + HSERO_RS00425 0.50 +0.2 100,208 - HSERO_RS00425 0.52 -1.1 100,237 - HSERO_RS00425 0.54 -0.2 100,378 + HSERO_RS00425 0.63 +0.7 100,433 - HSERO_RS00425 0.67 -1.2 100,616 + HSERO_RS00425 0.79 -0.7 100,675 + HSERO_RS00425 0.83 +0.3 100,675 + HSERO_RS00425 0.83 +0.3 100,773 + HSERO_RS00425 0.89 -0.9 100,793 - -0.2 100,795 + -1.0 100,795 + +0.5 100,905 - +1.1 100,940 - +0.4 100,970 - -0.0 101,072 + -0.7 101,739 - HSERO_RS00430 0.35 +0.4 101,773 + HSERO_RS00430 0.37 +3.0
Or see this region's nucleotide sequence