Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23365

Experiment: p-Coumaric (C) and Ammonium chloride (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with MOPS
5,249,444	+				-0.3
5,249,444	+				-0.9
5,249,514	-				-1.2
5,249,514	-				-1.8
5,249,518	+				-1.0
5,249,518	+				-1.4
5,249,519	-				-2.9
5,249,519	-				-2.2
5,249,569	+				-2.3
5,249,569	+				-2.2
5,249,569	+				-1.8
5,249,569	+				-2.3
5,249,570	-				-1.1
5,249,570	-				-2.0
5,249,570	-				-1.6
5,249,574	-				-2.8
5,249,574	-				-2.1
5,249,574	-				-1.3
5,249,593	+				-1.3
5,249,593	+				-1.9
5,249,593	+				-1.8
5,249,593	+				-2.6
5,249,593	+				-1.1
5,249,594	-				-2.2
5,249,594	-				-1.8
5,249,597	+				-0.6
5,249,597	+				+0.7
5,249,598	-				-1.8
5,249,598	-				-0.3
5,249,656	+		PFLU_RS23360	0.28	-1.6
5,249,656	+		PFLU_RS23360	0.28	-2.1
5,249,657	-		PFLU_RS23360	0.29	-3.1
5,249,657	-		PFLU_RS23360	0.29	-2.1
5,249,657	-		PFLU_RS23360	0.29	-1.1
5,249,657	-		PFLU_RS23360	0.29	-0.5
5,249,688	+		PFLU_RS23360	0.40	-2.9
5,249,688	+		PFLU_RS23360	0.40	-1.9
5,249,688	+		PFLU_RS23360	0.40	-2.6
5,249,694	+		PFLU_RS23360	0.42	-2.4
5,249,694	+		PFLU_RS23360	0.42	-3.8
5,249,694	+		PFLU_RS23360	0.42	-3.0
5,249,694	+		PFLU_RS23360	0.42	-1.8
5,249,695	-		PFLU_RS23360	0.43	-2.6
5,249,695	-		PFLU_RS23360	0.43	-2.1
5,249,695	-		PFLU_RS23360	0.43	-3.3
5,249,779	-		PFLU_RS23360	0.74	-1.3
5,249,804	+		PFLU_RS23360	0.83	-2.4
5,249,810	+		PFLU_RS23360	0.85	-2.5
5,249,810	+		PFLU_RS23360	0.85	-0.3
5,249,814	+		PFLU_RS23360	0.87	-1.1
5,249,815	-		PFLU_RS23360	0.87	+0.1
5,249,850	+				-0.9
5,249,850	+				+0.0
5,249,850	+				-0.4
5,249,851	-				-0.8
5,249,851	-				+0.4
5,249,859	+				-1.1
5,249,966	-				+2.1
5,249,966	-				+1.1
5,249,989	+				+1.2
5,249,989	+				+0.5
5,249,989	+				-0.3
5,249,989	+				-1.0
5,249,989	+				+1.1
5,249,990	-				+1.9
5,249,990	-				+1.1
5,249,990	-				-0.2
5,249,990	-				-0.0
5,249,990	-				+2.0
5,249,990	-				-0.9
5,249,990	-				-0.5
5,249,991	+				-0.5
5,249,991	+				-0.7
5,249,991	+				-0.3
5,249,992	-				+0.4
5,249,992	-				+1.8
5,249,992	-				+1.5
5,249,992	-				+1.4
5,250,074	+				-0.3
5,250,075	-				-0.3
5,250,076	+				-2.2
5,250,076	+				+0.4
5,250,077	-				-0.1
5,250,077	-				+1.1
5,250,077	-				+0.9
5,250,161	-				+1.2
5,250,173	+				+0.1
5,250,189	+				+0.0
5,250,189	+				+0.1
5,250,197	+				-1.0
5,250,197	+				-1.1
5,250,197	+				-2.1
5,250,198	-				+1.2
5,250,198	-				+1.0
5,250,246	+				+0.6
5,250,247	-				-0.3
5,250,289	+				+0.0
5,250,290	-				+1.4
5,250,310	+				+1.1
5,250,311	-				+1.2
5,250,311	-				+0.9
5,250,311	-				+0.4
5,250,335	-				+1.7
5,250,469	-				-0.9
5,250,752	+		PFLU_RS23365	0.26	+0.1
5,251,007	+		PFLU_RS23365	0.47	-0.8
5,251,007	+		PFLU_RS23365	0.47	+2.0
5,251,007	+		PFLU_RS23365	0.47	+1.1
5,251,007	+		PFLU_RS23365	0.47	+1.7
5,251,007	+		PFLU_RS23365	0.47	+0.5
5,251,190	+		PFLU_RS23365	0.61	-1.6
5,251,190	+		PFLU_RS23365	0.61	+0.1
5,251,190	+		PFLU_RS23365	0.61	+0.7
5,251,193	+		PFLU_RS23365	0.61	+1.7
5,251,193	+		PFLU_RS23365	0.61	-1.4
5,251,193	+		PFLU_RS23365	0.61	-0.6
5,251,193	+		PFLU_RS23365	0.61	-3.1
5,251,193	+		PFLU_RS23365	0.61	-2.3
5,251,194	-		PFLU_RS23365	0.61	+0.3
5,251,194	-		PFLU_RS23365	0.61	-0.4
5,251,194	-		PFLU_RS23365	0.61	+0.1
5,251,194	-		PFLU_RS23365	0.61	+0.8
5,251,194	-		PFLU_RS23365	0.61	+1.1
5,251,194	-		PFLU_RS23365	0.61	+1.5
5,251,194	-		PFLU_RS23365	0.61	+0.3
5,251,194	-		PFLU_RS23365	0.61	+0.9
5,251,200	+		PFLU_RS23365	0.62	-1.6
5,251,220	+		PFLU_RS23365	0.64	+0.5
5,251,220	+		PFLU_RS23365	0.64	+0.4
5,251,293	-		PFLU_RS23365	0.69	-0.2
5,251,293	-		PFLU_RS23365	0.69	+1.0
5,251,293	-		PFLU_RS23365	0.69	+1.7
5,251,293	-		PFLU_RS23365	0.69	+0.5
5,251,293	-		PFLU_RS23365	0.69	+1.6
5,251,293	-		PFLU_RS23365	0.69	+0.4
5,251,293	-		PFLU_RS23365	0.69	+1.4
5,251,293	-		PFLU_RS23365	0.69	+0.2
5,251,499	+		PFLU_RS23365	0.86	-1.8
5,251,499	+		PFLU_RS23365	0.86	-0.6
5,251,499	+		PFLU_RS23365	0.86	-0.7
5,251,554	-				+0.6
5,251,594	+				-1.0
5,251,636	+				+0.9
5,251,644	-				-0.8
5,251,644	-				-1.0
5,251,705	+				-0.0
5,251,706	-				-0.6
5,251,710	+				-0.1
5,251,710	+				-0.7
5,251,710	+				+0.3
5,251,710	+				-0.9
5,251,710	+				-0.8
5,251,710	+				-0.8
5,251,710	+				-1.7
5,251,710	+				+0.1
5,251,711	-				+0.9
5,251,711	-				+0.8
5,251,765	+				-1.8
5,251,765	+				+1.7
5,251,765	+				-0.6
5,251,765	+				+1.7
5,251,766	-				+1.3
5,251,766	-				+1.4
5,251,766	-				-1.5
5,251,773	+				+0.2
5,251,773	+				+0.6
5,251,773	+				+0.7
5,251,773	+				-0.7
5,251,773	+				-0.3
5,251,773	+				-0.9
5,251,773	+				-1.2
5,251,773	+				+1.5
5,251,774	-				+1.2
5,251,774	-				+1.1
5,251,774	-				+1.6
5,251,774	-				+0.1
5,251,774	-				+0.7
5,251,782	+				-1.1
5,251,783	-				-0.8
5,251,783	-				+0.2
5,251,783	-				-0.3
5,251,871	+				+0.2
5,251,871	+				+0.4
5,251,872	-				+0.5
5,251,872	-				+1.0
5,251,872	-				+0.0
5,251,872	-				-0.6
5,251,872	-				+1.8
5,251,872	-				+1.3
5,251,873	+				+1.3
5,251,992	+				-0.1
5,251,993	-				+0.1
5,251,996	+				-1.0
5,252,138	+		PFLU_RS23370	0.17	-0.5
5,252,138	+		PFLU_RS23370	0.17	+1.0
5,252,167	-		PFLU_RS23370	0.18	+0.4
5,252,167	-		PFLU_RS23370	0.18	-0.1
5,252,167	-		PFLU_RS23370	0.18	+0.5
5,252,169	+		PFLU_RS23370	0.18	-1.5
5,252,170	-		PFLU_RS23370	0.18	+0.3
5,252,170	-		PFLU_RS23370	0.18	+0.6
5,252,170	-		PFLU_RS23370	0.18	+0.4
5,252,233	-		PFLU_RS23370	0.22	+1.7
5,252,233	-		PFLU_RS23370	0.22	-2.5
5,252,317	-		PFLU_RS23370	0.26	+1.1
5,252,365	-		PFLU_RS23370	0.28	+0.5
5,252,374	-		PFLU_RS23370	0.29	-0.1
5,252,374	-		PFLU_RS23370	0.29	-0.1
5,252,378	+		PFLU_RS23370	0.29	+0.7
5,252,378	+		PFLU_RS23370	0.29	+0.4
5,252,379	-		PFLU_RS23370	0.29	+1.3
5,252,379	-		PFLU_RS23370	0.29	+0.3
5,252,382	+		PFLU_RS23370	0.29	-0.5
5,252,382	+		PFLU_RS23370	0.29	+0.1
5,252,382	+		PFLU_RS23370	0.29	-2.8
5,252,383	-		PFLU_RS23370	0.29	+1.0
5,252,383	-		PFLU_RS23370	0.29	-0.5
5,252,384	+		PFLU_RS23370	0.29	-0.5
5,252,384	+		PFLU_RS23370	0.29	+0.1
5,252,384	+		PFLU_RS23370	0.29	-0.5
5,252,385	-		PFLU_RS23370	0.29	+0.6
5,252,386	+		PFLU_RS23370	0.29	-2.5
5,252,386	+		PFLU_RS23370	0.29	-0.1
5,252,387	-		PFLU_RS23370	0.29	-2.0
5,252,387	-		PFLU_RS23370	0.29	+0.1
5,252,388	+		PFLU_RS23370	0.30	-0.3
5,252,389	-		PFLU_RS23370	0.30	-0.3
5,252,407	-		PFLU_RS23370	0.31	+1.7
5,252,476	-		PFLU_RS23370	0.34	-0.3
5,252,476	-		PFLU_RS23370	0.34	-1.5
5,252,511	+		PFLU_RS23370	0.36	+0.7
5,252,542	+		PFLU_RS23370	0.37	+0.2
5,252,544	+		PFLU_RS23370	0.38	-0.3
5,252,637	-		PFLU_RS23370	0.42	+1.2
5,252,668	-		PFLU_RS23370	0.44	+1.3