Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10990

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,477,732	+		HSERO_RS10985	0.54	+0.0
2,477,749	+		HSERO_RS10985	0.55	-0.3
2,477,776	+		HSERO_RS10985	0.57	-0.0
2,477,806	+		HSERO_RS10985	0.59	+0.3
2,477,838	-		HSERO_RS10985	0.61	+0.0
2,478,003	-		HSERO_RS10985	0.73	-0.6
2,478,012	+		HSERO_RS10985	0.73	-0.2
2,478,153	-		HSERO_RS10985	0.83	+0.3
2,478,202	-		HSERO_RS10985	0.87	-0.0
2,478,202	-		HSERO_RS10985	0.87	-1.1
2,478,323	+				-0.2
2,478,347	-				+0.4
2,478,554	-		HSERO_RS10990	0.24	+0.4
2,478,626	-		HSERO_RS10990	0.34	+0.3
2,478,770	+		HSERO_RS10990	0.55	+0.0
2,478,777	+		HSERO_RS10990	0.56	+0.2
2,478,835	+		HSERO_RS10990	0.64	+1.1
2,479,113	+				+0.0
2,479,226	+				-0.5
2,479,363	+				-0.3
2,479,381	+				-0.3
2,479,648	-		HSERO_RS10995	0.16	-0.5
2,479,787	-		HSERO_RS10995	0.25	+0.1
2,479,791	+		HSERO_RS10995	0.25	-0.7
2,479,830	-		HSERO_RS10995	0.27	-0.6
2,479,914	+		HSERO_RS10995	0.33	+0.0
2,480,032	+		HSERO_RS10995	0.40	+1.1