Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08380

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,907,770	+		HSERO_RS08375	0.45	-0.0
1,907,878	+		HSERO_RS08375	0.53	-0.4
1,907,927	+		HSERO_RS08375	0.57	-0.3
1,908,052	-		HSERO_RS08375	0.66	-0.0
1,908,062	-		HSERO_RS08375	0.67	-0.1
1,908,112	-		HSERO_RS08375	0.71	-2.0
1,908,205	-		HSERO_RS08375	0.78	+0.6
1,908,331	-		HSERO_RS08375	0.88	-0.3
1,908,392	+				-0.3
1,908,438	-				+0.3
1,908,466	+				+0.0
1,908,678	+				+0.9
1,908,701	-				+0.1
1,908,708	+				+0.2
1,908,816	+		HSERO_RS08380	0.30	+1.4
1,908,832	-		HSERO_RS08380	0.33	+1.9
1,908,966	+		HSERO_RS08380	0.60	-0.0
1,908,974	-		HSERO_RS08380	0.62	+1.4
1,909,048	-		HSERO_RS08380	0.77	-0.4
1,909,096	+		HSERO_RS08380	0.87	-0.2
1,909,104	-		HSERO_RS08380	0.89	+0.1
1,909,307	+				+0.7
1,909,316	-				-0.7
1,909,406	+				-0.1
1,909,735	-		HSERO_RS08385	0.17	+0.0
1,909,864	+		HSERO_RS08385	0.23	+1.2
1,910,069	+		HSERO_RS08385	0.31	+0.1