Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20690 and BWI76_RS20695 overlap by 11 nucleotides BWI76_RS20695 and BWI76_RS20700 overlap by 1 nucleotides BWI76_RS20700 and BWI76_RS20705 overlap by 1 nucleotides
BWI76_RS20690: BWI76_RS20690 - sulfate ABC transporter ATP-binding protein, at 4,327,867 to 4,328,961
_RS20690
BWI76_RS20695: BWI76_RS20695 - sulfate/thiosulfate transporter permease subunit, at 4,328,951 to 4,329,826
_RS20695
BWI76_RS20700: BWI76_RS20700 - sulfate/thiosulfate transporter subunit, at 4,329,826 to 4,330,659
_RS20700
BWI76_RS20705: BWI76_RS20705 - thiosulfate transporter subunit, at 4,330,659 to 4,331,675
_RS20705
Position (kb) 4329
4330
4331 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4328.885 kb on - strand at 4328.914 kb on - strand at 4329.541 kb on - strand, within BWI76_RS20695 at 4329.542 kb on + strand, within BWI76_RS20695 at 4329.550 kb on - strand, within BWI76_RS20695 at 4329.748 kb on + strand at 4329.874 kb on - strand at 4330.165 kb on + strand, within BWI76_RS20700 at 4330.224 kb on - strand, within BWI76_RS20700 at 4330.325 kb on - strand, within BWI76_RS20700 at 4330.512 kb on + strand, within BWI76_RS20700 at 4330.514 kb on + strand, within BWI76_RS20700 at 4330.520 kb on - strand, within BWI76_RS20700 at 4330.980 kb on + strand, within BWI76_RS20705 at 4331.072 kb on - strand, within BWI76_RS20705 at 4331.253 kb on + strand, within BWI76_RS20705 at 4331.340 kb on - strand, within BWI76_RS20705 at 4331.370 kb on - strand, within BWI76_RS20705 at 4331.440 kb on - strand, within BWI76_RS20705 at 4331.509 kb on + strand, within BWI76_RS20705 at 4331.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,328,885 - +0.2 4,328,914 - -0.9 4,329,541 - BWI76_RS20695 0.67 -0.7 4,329,542 + BWI76_RS20695 0.67 -0.1 4,329,550 - BWI76_RS20695 0.68 -2.3 4,329,748 + -3.3 4,329,874 - -0.7 4,330,165 + BWI76_RS20700 0.41 -1.5 4,330,224 - BWI76_RS20700 0.48 -0.3 4,330,325 - BWI76_RS20700 0.60 -1.5 4,330,512 + BWI76_RS20700 0.82 -1.3 4,330,514 + BWI76_RS20700 0.82 -1.6 4,330,520 - BWI76_RS20700 0.83 -0.3 4,330,980 + BWI76_RS20705 0.32 -2.3 4,331,072 - BWI76_RS20705 0.41 -0.6 4,331,253 + BWI76_RS20705 0.58 -2.4 4,331,340 - BWI76_RS20705 0.67 -0.9 4,331,370 - BWI76_RS20705 0.70 -2.4 4,331,440 - BWI76_RS20705 0.77 -0.1 4,331,509 + BWI76_RS20705 0.84 -2.4 4,331,586 + -0.8
Or see this region's nucleotide sequence