Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14665 and BWI76_RS14670 are separated by 10 nucleotides BWI76_RS14670 and BWI76_RS14675 overlap by 86 nucleotides BWI76_RS14675 and BWI76_RS14680 are separated by 12 nucleotides
BWI76_RS14665: BWI76_RS14665 - minor fimbrial subunit YfcQ, at 3,080,566 to 3,081,081
_RS14665
BWI76_RS14670: BWI76_RS14670 - hypothetical protein, at 3,081,092 to 3,081,697
_RS14670
BWI76_RS14675: BWI76_RS14675 - fimbrial chaperone YfcS, at 3,081,612 to 3,082,364
_RS14675
BWI76_RS14680: BWI76_RS14680 - SefF, at 3,082,377 to 3,082,901
_RS14680
Position (kb) 3081
3082 Strain fitness (log2 ratio) -2
-1
0
1 at 3080.110 kb on + strand at 3080.115 kb on + strand at 3080.123 kb on - strand at 3080.166 kb on - strand at 3080.290 kb on - strand at 3080.454 kb on - strand at 3080.462 kb on - strand at 3080.482 kb on - strand at 3080.482 kb on - strand at 3080.649 kb on - strand, within BWI76_RS14665 at 3080.805 kb on + strand, within BWI76_RS14665 at 3080.899 kb on - strand, within BWI76_RS14665 at 3081.057 kb on - strand at 3081.158 kb on - strand, within BWI76_RS14670 at 3081.205 kb on + strand, within BWI76_RS14670 at 3081.736 kb on - strand, within BWI76_RS14675 at 3081.752 kb on - strand, within BWI76_RS14675 at 3081.752 kb on - strand, within BWI76_RS14675 at 3081.865 kb on + strand, within BWI76_RS14675 at 3081.935 kb on + strand at 3082.639 kb on - strand, within BWI76_RS14680
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 3,080,110 + -0.7 3,080,115 + -0.8 3,080,123 - +0.0 3,080,166 - -1.0 3,080,290 - +0.4 3,080,454 - +0.2 3,080,462 - +0.8 3,080,482 - -0.6 3,080,482 - -0.7 3,080,649 - BWI76_RS14665 0.16 -1.6 3,080,805 + BWI76_RS14665 0.46 -0.4 3,080,899 - BWI76_RS14665 0.65 +0.5 3,081,057 - +0.8 3,081,158 - BWI76_RS14670 0.11 -1.4 3,081,205 + BWI76_RS14670 0.19 -1.3 3,081,736 - BWI76_RS14675 0.16 +0.4 3,081,752 - BWI76_RS14675 0.19 +0.0 3,081,752 - BWI76_RS14675 0.19 -0.8 3,081,865 + BWI76_RS14675 0.34 -2.4 3,081,935 + -1.3 3,082,639 - BWI76_RS14680 0.50 +0.5
Or see this region's nucleotide sequence