Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14630

Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14620 and BWI76_RS14625 are separated by 171 nucleotidesBWI76_RS14625 and BWI76_RS14630 are separated by 51 nucleotidesBWI76_RS14630 and BWI76_RS14635 are separated by 40 nucleotides BWI76_RS14620: BWI76_RS14620 - acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase, at 3,068,313 to 3,069,425 _RS14620 BWI76_RS14625: BWI76_RS14625 - protein TolA, at 3,069,597 to 3,070,025 _RS14625 BWI76_RS14630: BWI76_RS14630 - TonB-dependent receptor, at 3,070,077 to 3,072,041 _RS14630 BWI76_RS14635: BWI76_RS14635 - receptor, at 3,072,082 to 3,073,140 _RS14635 Position (kb) 3070 3071 3072 3073Strain fitness (log2 ratio) -2 -1 0 1 2at 3069.389 kb on + strandat 3069.850 kb on - strand, within BWI76_RS14625at 3070.008 kb on - strandat 3070.193 kb on + strandat 3070.506 kb on - strand, within BWI76_RS14630at 3070.637 kb on + strand, within BWI76_RS14630at 3070.851 kb on - strand, within BWI76_RS14630at 3070.858 kb on - strand, within BWI76_RS14630at 3071.081 kb on + strand, within BWI76_RS14630at 3071.081 kb on + strand, within BWI76_RS14630at 3071.081 kb on + strand, within BWI76_RS14630at 3071.081 kb on + strand, within BWI76_RS14630at 3071.089 kb on - strand, within BWI76_RS14630at 3071.204 kb on + strand, within BWI76_RS14630at 3071.212 kb on - strand, within BWI76_RS14630at 3071.262 kb on + strand, within BWI76_RS14630at 3071.403 kb on + strand, within BWI76_RS14630at 3071.574 kb on - strand, within BWI76_RS14630at 3071.756 kb on + strand, within BWI76_RS14630at 3071.785 kb on - strand, within BWI76_RS14630at 3071.817 kb on + strand, within BWI76_RS14630at 3071.876 kb on + strandat 3072.299 kb on + strand, within BWI76_RS14635at 3072.307 kb on - strand, within BWI76_RS14635at 3072.312 kb on - strand, within BWI76_RS14635at 3072.422 kb on - strand, within BWI76_RS14635at 3072.427 kb on - strand, within BWI76_RS14635at 3072.432 kb on - strand, within BWI76_RS14635at 3072.547 kb on + strand, within BWI76_RS14635at 3072.547 kb on - strand, within BWI76_RS14635at 3072.640 kb on - strand, within BWI76_RS14635at 3072.643 kb on + strand, within BWI76_RS14635at 3072.743 kb on + strand, within BWI76_RS14635at 3072.770 kb on + strand, within BWI76_RS14635

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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3,069,389 + -1.4
3,069,850 - BWI76_RS14625 0.59 -0.2
3,070,008 - +1.3
3,070,193 + -0.1
3,070,506 - BWI76_RS14630 0.22 -2.6
3,070,637 + BWI76_RS14630 0.28 -0.6
3,070,851 - BWI76_RS14630 0.39 -1.0
3,070,858 - BWI76_RS14630 0.40 -0.7
3,071,081 + BWI76_RS14630 0.51 -1.5
3,071,081 + BWI76_RS14630 0.51 -0.2
3,071,081 + BWI76_RS14630 0.51 -0.8
3,071,081 + BWI76_RS14630 0.51 -1.8
3,071,089 - BWI76_RS14630 0.52 +0.1
3,071,204 + BWI76_RS14630 0.57 -0.7
3,071,212 - BWI76_RS14630 0.58 +0.1
3,071,262 + BWI76_RS14630 0.60 -0.2
3,071,403 + BWI76_RS14630 0.67 +1.6
3,071,574 - BWI76_RS14630 0.76 +0.3
3,071,756 + BWI76_RS14630 0.85 +0.2
3,071,785 - BWI76_RS14630 0.87 -0.4
3,071,817 + BWI76_RS14630 0.89 -0.4
3,071,876 + +0.4
3,072,299 + BWI76_RS14635 0.20 -1.2
3,072,307 - BWI76_RS14635 0.21 +0.0
3,072,312 - BWI76_RS14635 0.22 -0.3
3,072,422 - BWI76_RS14635 0.32 -2.7
3,072,427 - BWI76_RS14635 0.33 +0.3
3,072,432 - BWI76_RS14635 0.33 -0.8
3,072,547 + BWI76_RS14635 0.44 -1.6
3,072,547 - BWI76_RS14635 0.44 +2.0
3,072,640 - BWI76_RS14635 0.53 +0.5
3,072,643 + BWI76_RS14635 0.53 -0.0
3,072,743 + BWI76_RS14635 0.62 -0.6
3,072,770 + BWI76_RS14635 0.65 -0.5

Or see this region's nucleotide sequence