Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14325

Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14315 and BWI76_RS14320 are separated by 1 nucleotidesBWI76_RS14320 and BWI76_RS14325 are separated by 7 nucleotidesBWI76_RS14325 and BWI76_RS14330 are separated by 18 nucleotides BWI76_RS14315: BWI76_RS14315 - MazG nucleotide pyrophosphohydrolase, at 2,991,554 to 2,991,892 _RS14315 BWI76_RS14320: BWI76_RS14320 - hypothetical protein, at 2,991,894 to 2,992,829 _RS14320 BWI76_RS14325: BWI76_RS14325 - maturase, at 2,992,837 to 2,992,957 _RS14325 BWI76_RS14330: BWI76_RS14330 - IS3 family transposase, at 2,992,976 to 2,993,797 _RS14330 Position (kb) 2992 2993Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2992.011 kb on + strand, within BWI76_RS14320at 2992.114 kb on + strand, within BWI76_RS14320at 2992.201 kb on + strand, within BWI76_RS14320at 2992.293 kb on + strandat 2992.293 kb on + strand, within BWI76_RS14320at 2992.395 kb on + strand, within BWI76_RS14320at 2992.830 kb on + strandat 2992.894 kb on + strand, within BWI76_RS14325at 2992.929 kb on - strand, within BWI76_RS14325at 2992.932 kb on + strand, within BWI76_RS14325at 2992.939 kb on + strand, within BWI76_RS14325at 2992.945 kb on + strand, within BWI76_RS14325at 2992.945 kb on + strand, within BWI76_RS14325at 2992.945 kb on + strand, within BWI76_RS14325at 2992.953 kb on + strandat 2992.989 kb on + strandat 2992.989 kb on + strandat 2993.024 kb on + strandat 2993.078 kb on - strand, within BWI76_RS14330at 2993.080 kb on - strandat 2993.116 kb on + strand, within BWI76_RS14330at 2993.159 kb on + strand, within BWI76_RS14330at 2993.167 kb on - strand, within BWI76_RS14330at 2993.191 kb on + strand, within BWI76_RS14330at 2993.199 kb on - strand, within BWI76_RS14330at 2993.224 kb on - strand, within BWI76_RS14330at 2993.227 kb on + strand, within BWI76_RS14330at 2993.227 kb on - strand, within BWI76_RS14330at 2993.234 kb on - strand, within BWI76_RS14330at 2993.235 kb on - strand, within BWI76_RS14330at 2993.236 kb on + strand, within BWI76_RS14330at 2993.236 kb on + strand, within BWI76_RS14330at 2993.244 kb on - strand, within BWI76_RS14330at 2993.317 kb on + strand, within BWI76_RS14330at 2993.350 kb on + strand, within BWI76_RS14330at 2993.418 kb on - strandat 2993.426 kb on - strand, within BWI76_RS14330at 2993.467 kb on - strand, within BWI76_RS14330at 2993.473 kb on + strand, within BWI76_RS14330at 2993.749 kb on - strandat 2993.918 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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2,992,011 + BWI76_RS14320 0.12 -2.6
2,992,114 + BWI76_RS14320 0.24 +1.0
2,992,201 + BWI76_RS14320 0.33 -0.6
2,992,293 + +0.4
2,992,293 + BWI76_RS14320 0.43 -2.0
2,992,395 + BWI76_RS14320 0.54 -1.8
2,992,830 + -1.2
2,992,894 + BWI76_RS14325 0.47 -0.2
2,992,929 - BWI76_RS14325 0.76 -1.3
2,992,932 + BWI76_RS14325 0.79 -2.0
2,992,939 + BWI76_RS14325 0.84 -1.3
2,992,945 + BWI76_RS14325 0.89 -0.6
2,992,945 + BWI76_RS14325 0.89 -0.7
2,992,945 + BWI76_RS14325 0.89 -1.6
2,992,953 + -0.3
2,992,989 + -2.0
2,992,989 + +0.9
2,993,024 + -0.5
2,993,078 - BWI76_RS14330 0.12 -2.3
2,993,080 - +0.5
2,993,116 + BWI76_RS14330 0.17 -0.1
2,993,159 + BWI76_RS14330 0.22 -1.0
2,993,167 - BWI76_RS14330 0.23 +1.0
2,993,191 + BWI76_RS14330 0.26 -2.1
2,993,199 - BWI76_RS14330 0.27 +0.6
2,993,224 - BWI76_RS14330 0.30 -1.0
2,993,227 + BWI76_RS14330 0.31 +0.9
2,993,227 - BWI76_RS14330 0.31 -1.0
2,993,234 - BWI76_RS14330 0.31 -3.3
2,993,235 - BWI76_RS14330 0.32 +0.7
2,993,236 + BWI76_RS14330 0.32 -0.1
2,993,236 + BWI76_RS14330 0.32 -0.4
2,993,244 - BWI76_RS14330 0.33 +0.9
2,993,317 + BWI76_RS14330 0.41 -0.6
2,993,350 + BWI76_RS14330 0.45 +0.1
2,993,418 - +0.0
2,993,426 - BWI76_RS14330 0.55 +1.0
2,993,467 - BWI76_RS14330 0.60 +2.6
2,993,473 + BWI76_RS14330 0.60 +2.0
2,993,749 - -0.3
2,993,918 - +0.8

Or see this region's nucleotide sequence