Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14080 and BWI76_RS14085 are separated by 16 nucleotides BWI76_RS14085 and BWI76_RS14090 are separated by 123 nucleotides BWI76_RS14090 and BWI76_RS14095 are separated by 30 nucleotides
BWI76_RS14080: BWI76_RS14080 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,941,617 to 2,944,724
_RS14080
BWI76_RS14085: BWI76_RS14085 - hypothetical protein, at 2,944,741 to 2,945,163
_RS14085
BWI76_RS14090: BWI76_RS14090 - polyketide cyclase, at 2,945,287 to 2,945,740
_RS14090
BWI76_RS14095: BWI76_RS14095 - hypothetical protein, at 2,945,771 to 2,947,096
_RS14095
Position (kb)
2945
2946 Strain fitness (log2 ratio)
-1
0
1
2 at 2944.337 kb on + strand, within BWI76_RS14080 at 2944.510 kb on + strand at 2944.734 kb on + strand at 2945.332 kb on + strand at 2945.407 kb on - strand, within BWI76_RS14090 at 2945.451 kb on - strand, within BWI76_RS14090 at 2945.573 kb on - strand, within BWI76_RS14090 at 2945.963 kb on + strand, within BWI76_RS14095 at 2945.963 kb on + strand, within BWI76_RS14095 at 2945.979 kb on + strand, within BWI76_RS14095 at 2945.997 kb on - strand, within BWI76_RS14095 at 2946.465 kb on - strand, within BWI76_RS14095 at 2946.465 kb on - strand, within BWI76_RS14095 at 2946.503 kb on + strand, within BWI76_RS14095 at 2946.550 kb on + strand, within BWI76_RS14095 at 2946.606 kb on + strand, within BWI76_RS14095 at 2946.663 kb on - strand, within BWI76_RS14095
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 2,944,337 + BWI76_RS14080 0.88 +0.8 2,944,510 + -0.1 2,944,734 + +1.0 2,945,332 + +0.3 2,945,407 - BWI76_RS14090 0.26 -1.6 2,945,451 - BWI76_RS14090 0.36 -0.4 2,945,573 - BWI76_RS14090 0.63 -0.8 2,945,963 + BWI76_RS14095 0.14 +0.0 2,945,963 + BWI76_RS14095 0.14 +0.0 2,945,979 + BWI76_RS14095 0.16 -0.1 2,945,997 - BWI76_RS14095 0.17 +0.3 2,946,465 - BWI76_RS14095 0.52 +0.9 2,946,465 - BWI76_RS14095 0.52 +0.9 2,946,503 + BWI76_RS14095 0.55 +2.0 2,946,550 + BWI76_RS14095 0.59 -0.2 2,946,606 + BWI76_RS14095 0.63 -0.2 2,946,663 - BWI76_RS14095 0.67 +0.0
Or see this region's nucleotide sequence