Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11055 and BWI76_RS11060 are separated by 190 nucleotides BWI76_RS11060 and BWI76_RS11065 are separated by 141 nucleotides BWI76_RS11065 and BWI76_RS11070 are separated by 16 nucleotides BWI76_RS11070 and BWI76_RS11075 are separated by 79 nucleotides
BWI76_RS11055: BWI76_RS11055 - hydrolase, at 2,333,421 to 2,334,566
_RS11055
BWI76_RS11060: BWI76_RS11060 - septum formation inhibitor Maf, at 2,334,757 to 2,335,341
_RS11060
BWI76_RS11065: BWI76_RS11065 - hypothetical protein, at 2,335,483 to 2,336,004
_RS11065
BWI76_RS11070: BWI76_RS11070 - 50S ribosomal protein L32, at 2,336,021 to 2,336,194
_RS11070
BWI76_RS11075: BWI76_RS11075 - phosphate acyltransferase, at 2,336,274 to 2,337,371
_RS11075
Position (kb)
2334
2335
2336 Strain fitness (log2 ratio)
-2
-1
0
1 at 2333.838 kb on + strand, within BWI76_RS11055 at 2334.197 kb on + strand, within BWI76_RS11055 at 2334.286 kb on - strand, within BWI76_RS11055 at 2334.373 kb on - strand, within BWI76_RS11055 at 2334.548 kb on - strand at 2334.685 kb on + strand at 2334.914 kb on - strand, within BWI76_RS11060 at 2335.003 kb on - strand at 2335.153 kb on + strand, within BWI76_RS11060
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 2,333,838 + BWI76_RS11055 0.36 -0.1 2,334,197 + BWI76_RS11055 0.68 +0.1 2,334,286 - BWI76_RS11055 0.75 -0.0 2,334,373 - BWI76_RS11055 0.83 -0.3 2,334,548 - -0.7 2,334,685 + +0.0 2,334,914 - BWI76_RS11060 0.27 -1.1 2,335,003 - +1.0 2,335,153 + BWI76_RS11060 0.68 -2.4
Or see this region's nucleotide sequence