Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11060

Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11055 and BWI76_RS11060 are separated by 190 nucleotidesBWI76_RS11060 and BWI76_RS11065 are separated by 141 nucleotidesBWI76_RS11065 and BWI76_RS11070 are separated by 16 nucleotidesBWI76_RS11070 and BWI76_RS11075 are separated by 79 nucleotides BWI76_RS11055: BWI76_RS11055 - hydrolase, at 2,333,421 to 2,334,566 _RS11055 BWI76_RS11060: BWI76_RS11060 - septum formation inhibitor Maf, at 2,334,757 to 2,335,341 _RS11060 BWI76_RS11065: BWI76_RS11065 - hypothetical protein, at 2,335,483 to 2,336,004 _RS11065 BWI76_RS11070: BWI76_RS11070 - 50S ribosomal protein L32, at 2,336,021 to 2,336,194 _RS11070 BWI76_RS11075: BWI76_RS11075 - phosphate acyltransferase, at 2,336,274 to 2,337,371 _RS11075 Position (kb) 2334 2335 2336Strain fitness (log2 ratio) -2 -1 0 1at 2333.838 kb on + strand, within BWI76_RS11055at 2334.197 kb on + strand, within BWI76_RS11055at 2334.286 kb on - strand, within BWI76_RS11055at 2334.373 kb on - strand, within BWI76_RS11055at 2334.548 kb on - strandat 2334.685 kb on + strandat 2334.914 kb on - strand, within BWI76_RS11060at 2335.003 kb on - strandat 2335.153 kb on + strand, within BWI76_RS11060

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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2,333,838 + BWI76_RS11055 0.36 -0.1
2,334,197 + BWI76_RS11055 0.68 +0.1
2,334,286 - BWI76_RS11055 0.75 -0.0
2,334,373 - BWI76_RS11055 0.83 -0.3
2,334,548 - -0.7
2,334,685 + +0.0
2,334,914 - BWI76_RS11060 0.27 -1.1
2,335,003 - +1.0
2,335,153 + BWI76_RS11060 0.68 -2.4

Or see this region's nucleotide sequence