Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11040 and BWI76_RS11045 are separated by 307 nucleotides BWI76_RS11045 and BWI76_RS11050 are separated by 189 nucleotides BWI76_RS11050 and BWI76_RS11055 are separated by 12 nucleotides
BWI76_RS11040: BWI76_RS11040 - ribonuclease E, at 2,328,509 to 2,331,757
_RS11040
BWI76_RS11045: BWI76_RS11045 - hypothetical protein, at 2,332,065 to 2,332,223
_RS11045
BWI76_RS11050: BWI76_RS11050 - 23S rRNA pseudouridine(955/2504/2580) synthase, at 2,332,413 to 2,333,408
_RS11050
BWI76_RS11055: BWI76_RS11055 - hydrolase, at 2,333,421 to 2,334,566
_RS11055
Position (kb)
2332
2333
2334 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2332.246 kb on - strand at 2332.334 kb on - strand at 2332.375 kb on + strand at 2332.420 kb on + strand at 2332.541 kb on + strand, within BWI76_RS11050 at 2332.547 kb on - strand, within BWI76_RS11050 at 2332.547 kb on - strand, within BWI76_RS11050 at 2332.549 kb on - strand, within BWI76_RS11050 at 2332.549 kb on - strand, within BWI76_RS11050 at 2332.585 kb on + strand, within BWI76_RS11050 at 2332.699 kb on + strand, within BWI76_RS11050 at 2332.806 kb on + strand, within BWI76_RS11050 at 2332.813 kb on + strand, within BWI76_RS11050 at 2332.821 kb on - strand, within BWI76_RS11050 at 2332.989 kb on - strand, within BWI76_RS11050 at 2333.186 kb on - strand, within BWI76_RS11050 at 2333.211 kb on - strand, within BWI76_RS11050 at 2333.570 kb on + strand, within BWI76_RS11055 at 2333.838 kb on + strand, within BWI76_RS11055 at 2334.197 kb on + strand, within BWI76_RS11055 at 2334.286 kb on - strand, within BWI76_RS11055 at 2334.373 kb on - strand, within BWI76_RS11055
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 2,332,246 - +1.2 2,332,334 - +0.7 2,332,375 + +0.4 2,332,420 + -1.4 2,332,541 + BWI76_RS11050 0.13 +0.2 2,332,547 - BWI76_RS11050 0.13 +1.3 2,332,547 - BWI76_RS11050 0.13 -0.9 2,332,549 - BWI76_RS11050 0.14 -0.9 2,332,549 - BWI76_RS11050 0.14 +1.0 2,332,585 + BWI76_RS11050 0.17 -0.4 2,332,699 + BWI76_RS11050 0.29 -1.6 2,332,806 + BWI76_RS11050 0.39 -1.9 2,332,813 + BWI76_RS11050 0.40 -3.2 2,332,821 - BWI76_RS11050 0.41 +0.2 2,332,989 - BWI76_RS11050 0.58 -1.0 2,333,186 - BWI76_RS11050 0.78 -2.7 2,333,211 - BWI76_RS11050 0.80 -0.6 2,333,570 + BWI76_RS11055 0.13 +0.3 2,333,838 + BWI76_RS11055 0.36 -0.1 2,334,197 + BWI76_RS11055 0.68 +0.1 2,334,286 - BWI76_RS11055 0.75 -0.0 2,334,373 - BWI76_RS11055 0.83 -0.3
Or see this region's nucleotide sequence