Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09820 and BWI76_RS09825 overlap by 24 nucleotides BWI76_RS09825 and BWI76_RS09830 are separated by 121 nucleotides BWI76_RS09830 and BWI76_RS09835 are separated by 3 nucleotides
BWI76_RS09820: BWI76_RS09820 - hypothetical protein, at 2,060,256 to 2,061,149
_RS09820
BWI76_RS09825: BWI76_RS09825 - envelope biogenesis factor ElyC, at 2,061,126 to 2,061,905
_RS09825
BWI76_RS09830: BWI76_RS09830 - tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM, at 2,062,027 to 2,062,806
_RS09830
BWI76_RS09835: BWI76_RS09835 - chromosome partition protein MukF, at 2,062,810 to 2,064,132
_RS09835
Position (kb) 2062
2063 Strain fitness (log2 ratio) -2
-1
0
1 at 2061.255 kb on - strand, within BWI76_RS09825 at 2061.333 kb on + strand, within BWI76_RS09825 at 2061.806 kb on + strand, within BWI76_RS09825 at 2061.811 kb on + strand, within BWI76_RS09825 at 2061.814 kb on - strand, within BWI76_RS09825 at 2061.990 kb on - strand at 2062.032 kb on - strand at 2062.330 kb on + strand, within BWI76_RS09830
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 2,061,255 - BWI76_RS09825 0.17 -0.0 2,061,333 + BWI76_RS09825 0.27 -0.8 2,061,806 + BWI76_RS09825 0.87 -0.9 2,061,811 + BWI76_RS09825 0.88 +0.2 2,061,814 - BWI76_RS09825 0.88 -2.6 2,061,990 - +1.0 2,062,032 - +1.3 2,062,330 + BWI76_RS09830 0.39 -1.1
Or see this region's nucleotide sequence