Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03605 and BWI76_RS03610 are separated by 406 nucleotides BWI76_RS03610 and BWI76_RS03615 overlap by 4 nucleotides BWI76_RS03615 and BWI76_RS03620 are separated by 17 nucleotides BWI76_RS03620 and BWI76_RS03625 are separated by 147 nucleotides
BWI76_RS03605: BWI76_RS03605 - BMC domain-containing protein, at 746,559 to 746,837
_RS03605
BWI76_RS03610: BWI76_RS03610 - hypothetical protein, at 747,244 to 747,762
_RS03610
BWI76_RS03615: BWI76_RS03615 - putative transcriptional regulatory protein, at 747,759 to 748,559
_RS03615
BWI76_RS03620: BWI76_RS03620 - TetR family transcriptional regulator, at 748,577 to 749,161
_RS03620
BWI76_RS03625: BWI76_RS03625 - NAD(P)H quinone oxidoreductase, at 749,309 to 750,091
_RS03625
Position (kb) 747
748
749 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 746.769 kb on - strand, within BWI76_RS03605 at 746.819 kb on + strand at 746.819 kb on + strand at 746.827 kb on - strand at 746.827 kb on - strand at 747.301 kb on + strand, within BWI76_RS03610 at 747.338 kb on + strand, within BWI76_RS03610 at 747.652 kb on + strand, within BWI76_RS03610 at 747.722 kb on + strand at 747.809 kb on + strand at 747.856 kb on - strand, within BWI76_RS03615 at 748.031 kb on + strand, within BWI76_RS03615 at 748.040 kb on + strand, within BWI76_RS03615 at 748.255 kb on + strand, within BWI76_RS03615 at 748.265 kb on + strand, within BWI76_RS03615 at 748.265 kb on + strand, within BWI76_RS03615 at 748.265 kb on + strand, within BWI76_RS03615 at 748.369 kb on + strand, within BWI76_RS03615 at 748.574 kb on + strand at 748.728 kb on + strand, within BWI76_RS03620 at 748.814 kb on - strand, within BWI76_RS03620 at 748.823 kb on + strand, within BWI76_RS03620 at 748.823 kb on + strand, within BWI76_RS03620 at 748.859 kb on + strand, within BWI76_RS03620 at 748.867 kb on - strand, within BWI76_RS03620 at 749.145 kb on - strand at 749.219 kb on - strand at 749.320 kb on - strand at 749.376 kb on - strand at 749.381 kb on + strand at 749.483 kb on - strand, within BWI76_RS03625 at 749.530 kb on + strand, within BWI76_RS03625 at 749.538 kb on - strand, within BWI76_RS03625
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 746,769 - BWI76_RS03605 0.75 -1.1 746,819 + +1.4 746,819 + -0.4 746,827 - -0.1 746,827 - +0.4 747,301 + BWI76_RS03610 0.11 -0.6 747,338 + BWI76_RS03610 0.18 +0.4 747,652 + BWI76_RS03610 0.79 -0.4 747,722 + +3.0 747,809 + +2.3 747,856 - BWI76_RS03615 0.12 -1.5 748,031 + BWI76_RS03615 0.34 +0.3 748,040 + BWI76_RS03615 0.35 -0.3 748,255 + BWI76_RS03615 0.62 -0.7 748,265 + BWI76_RS03615 0.63 -2.7 748,265 + BWI76_RS03615 0.63 -0.5 748,265 + BWI76_RS03615 0.63 -0.3 748,369 + BWI76_RS03615 0.76 -0.1 748,574 + -0.1 748,728 + BWI76_RS03620 0.26 +1.3 748,814 - BWI76_RS03620 0.41 +0.3 748,823 + BWI76_RS03620 0.42 +0.2 748,823 + BWI76_RS03620 0.42 -0.5 748,859 + BWI76_RS03620 0.48 +0.5 748,867 - BWI76_RS03620 0.50 +0.7 749,145 - -1.4 749,219 - +2.0 749,320 - -1.1 749,376 - +0.2 749,381 + +0.9 749,483 - BWI76_RS03625 0.22 +4.2 749,530 + BWI76_RS03625 0.28 -0.0 749,538 - BWI76_RS03625 0.29 +0.5
Or see this region's nucleotide sequence