Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02020 and BWI76_RS02025 are separated by 185 nucleotides BWI76_RS02025 and BWI76_RS02030 are separated by 305 nucleotides
BWI76_RS02020: BWI76_RS02020 - Na+/H+ antiporter, at 414,408 to 416,054
_RS02020
BWI76_RS02025: BWI76_RS02025 - LysR family transcriptional regulator, at 416,240 to 417,127
_RS02025
BWI76_RS02030: BWI76_RS02030 - auxin efflux carrier, at 417,433 to 418,371
_RS02030
Position (kb) 416
417
418 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 415.417 kb on - strand, within BWI76_RS02020 at 415.417 kb on - strand, within BWI76_RS02020 at 415.428 kb on - strand, within BWI76_RS02020 at 415.593 kb on + strand, within BWI76_RS02020 at 415.695 kb on - strand, within BWI76_RS02020 at 415.715 kb on - strand, within BWI76_RS02020 at 415.828 kb on + strand at 415.836 kb on - strand at 415.848 kb on - strand, within BWI76_RS02020 at 415.937 kb on - strand at 415.950 kb on + strand at 415.952 kb on + strand at 415.958 kb on - strand at 415.969 kb on + strand at 415.995 kb on + strand at 416.014 kb on + strand at 416.014 kb on + strand at 416.014 kb on + strand at 416.022 kb on - strand at 416.024 kb on + strand at 416.032 kb on - strand at 416.048 kb on + strand at 416.048 kb on + strand at 416.070 kb on + strand at 416.078 kb on - strand at 416.083 kb on - strand at 416.083 kb on - strand at 416.173 kb on + strand at 416.173 kb on + strand at 416.181 kb on - strand at 416.181 kb on - strand at 416.181 kb on - strand at 416.181 kb on - strand at 416.183 kb on + strand at 416.183 kb on - strand at 416.185 kb on + strand at 416.185 kb on + strand at 416.191 kb on - strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.227 kb on - strand at 416.237 kb on - strand at 416.237 kb on - strand at 416.400 kb on - strand, within BWI76_RS02025 at 416.448 kb on + strand, within BWI76_RS02025 at 416.520 kb on + strand, within BWI76_RS02025 at 416.590 kb on + strand, within BWI76_RS02025 at 416.680 kb on + strand, within BWI76_RS02025 at 416.736 kb on - strand, within BWI76_RS02025 at 416.838 kb on + strand, within BWI76_RS02025 at 416.851 kb on - strand, within BWI76_RS02025 at 416.851 kb on - strand at 416.851 kb on - strand, within BWI76_RS02025 at 416.851 kb on - strand, within BWI76_RS02025 at 416.901 kb on + strand, within BWI76_RS02025 at 416.905 kb on + strand, within BWI76_RS02025 at 416.909 kb on - strand at 416.914 kb on - strand, within BWI76_RS02025 at 416.915 kb on + strand, within BWI76_RS02025 at 416.925 kb on + strand, within BWI76_RS02025 at 416.938 kb on + strand, within BWI76_RS02025 at 416.949 kb on + strand, within BWI76_RS02025 at 416.953 kb on + strand, within BWI76_RS02025 at 416.953 kb on + strand, within BWI76_RS02025 at 416.953 kb on + strand, within BWI76_RS02025 at 416.955 kb on - strand, within BWI76_RS02025 at 416.958 kb on + strand, within BWI76_RS02025 at 416.959 kb on + strand, within BWI76_RS02025 at 416.959 kb on - strand, within BWI76_RS02025 at 416.961 kb on - strand, within BWI76_RS02025 at 416.961 kb on - strand, within BWI76_RS02025 at 416.961 kb on - strand, within BWI76_RS02025 at 416.964 kb on + strand, within BWI76_RS02025 at 416.964 kb on + strand, within BWI76_RS02025 at 416.966 kb on - strand, within BWI76_RS02025 at 416.966 kb on - strand, within BWI76_RS02025 at 416.967 kb on - strand, within BWI76_RS02025 at 416.972 kb on - strand, within BWI76_RS02025 at 416.975 kb on + strand, within BWI76_RS02025 at 416.990 kb on + strand, within BWI76_RS02025 at 416.998 kb on - strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.032 kb on + strand, within BWI76_RS02025 at 417.033 kb on + strand, within BWI76_RS02025 at 417.036 kb on - strand, within BWI76_RS02025 at 417.042 kb on + strand at 417.056 kb on + strand at 417.058 kb on + strand at 417.058 kb on + strand at 417.058 kb on + strand at 417.063 kb on + strand at 417.063 kb on + strand at 417.063 kb on + strand at 417.064 kb on + strand at 417.064 kb on + strand at 417.066 kb on - strand at 417.066 kb on - strand at 417.066 kb on - strand at 417.066 kb on - strand at 417.069 kb on + strand at 417.069 kb on + strand at 417.069 kb on + strand at 417.069 kb on + strand at 417.069 kb on + strand at 417.069 kb on + strand at 417.069 kb on + strand at 417.069 kb on + strand at 417.069 kb on + strand at 417.071 kb on - strand at 417.071 kb on - strand at 417.072 kb on - strand at 417.076 kb on + strand at 417.076 kb on + strand at 417.076 kb on + strand at 417.077 kb on - strand at 417.077 kb on - strand at 417.077 kb on - strand at 417.077 kb on - strand at 417.077 kb on - strand at 417.077 kb on - strand at 417.077 kb on - strand at 417.084 kb on - strand at 417.084 kb on - strand at 417.136 kb on - strand at 417.150 kb on + strand at 417.313 kb on + strand at 417.315 kb on - strand at 417.321 kb on - strand at 417.332 kb on + strand at 417.332 kb on + strand at 417.340 kb on - strand at 417.340 kb on - strand at 417.340 kb on - strand at 417.340 kb on - strand at 417.346 kb on + strand at 417.346 kb on + strand at 417.354 kb on - strand at 417.369 kb on + strand at 417.369 kb on + strand at 417.369 kb on + strand at 417.369 kb on + strand at 417.369 kb on + strand at 417.369 kb on + strand at 417.409 kb on - strand at 417.468 kb on + strand at 417.534 kb on + strand, within BWI76_RS02030 at 417.540 kb on + strand, within BWI76_RS02030 at 417.567 kb on + strand, within BWI76_RS02030 at 417.570 kb on - strand, within BWI76_RS02030 at 417.575 kb on - strand, within BWI76_RS02030 at 417.620 kb on + strand, within BWI76_RS02030 at 417.623 kb on - strand, within BWI76_RS02030 at 417.641 kb on - strand, within BWI76_RS02030 at 417.734 kb on - strand, within BWI76_RS02030 at 417.737 kb on + strand, within BWI76_RS02030 at 417.745 kb on - strand, within BWI76_RS02030 at 417.812 kb on + strand, within BWI76_RS02030 at 417.837 kb on + strand at 417.881 kb on + strand, within BWI76_RS02030 at 417.919 kb on + strand, within BWI76_RS02030 at 417.961 kb on - strand, within BWI76_RS02030 at 417.971 kb on - strand, within BWI76_RS02030 at 417.973 kb on + strand, within BWI76_RS02030 at 417.973 kb on + strand, within BWI76_RS02030 at 417.981 kb on - strand, within BWI76_RS02030 at 418.036 kb on + strand, within BWI76_RS02030 at 418.061 kb on + strand, within BWI76_RS02030 at 418.061 kb on + strand, within BWI76_RS02030 at 418.061 kb on + strand, within BWI76_RS02030 at 418.061 kb on + strand, within BWI76_RS02030 at 418.066 kb on + strand, within BWI76_RS02030 at 418.066 kb on + strand, within BWI76_RS02030 at 418.071 kb on + strand, within BWI76_RS02030 at 418.071 kb on + strand, within BWI76_RS02030 at 418.071 kb on + strand, within BWI76_RS02030 at 418.071 kb on + strand, within BWI76_RS02030 at 418.071 kb on + strand, within BWI76_RS02030 at 418.071 kb on + strand, within BWI76_RS02030 at 418.071 kb on + strand, within BWI76_RS02030 at 418.071 kb on + strand, within BWI76_RS02030 at 418.071 kb on + strand, within BWI76_RS02030 at 418.074 kb on - strand, within BWI76_RS02030 at 418.074 kb on - strand, within BWI76_RS02030 at 418.079 kb on - strand, within BWI76_RS02030 at 418.082 kb on + strand, within BWI76_RS02030 at 418.082 kb on + strand, within BWI76_RS02030 at 418.082 kb on + strand, within BWI76_RS02030 at 418.082 kb on + strand, within BWI76_RS02030 at 418.082 kb on + strand, within BWI76_RS02030 at 418.082 kb on + strand, within BWI76_RS02030 at 418.084 kb on + strand, within BWI76_RS02030 at 418.084 kb on + strand at 418.090 kb on - strand, within BWI76_RS02030 at 418.090 kb on - strand, within BWI76_RS02030 at 418.092 kb on - strand, within BWI76_RS02030 at 418.092 kb on - strand, within BWI76_RS02030 at 418.098 kb on + strand, within BWI76_RS02030 at 418.103 kb on + strand, within BWI76_RS02030 at 418.103 kb on + strand, within BWI76_RS02030 at 418.103 kb on + strand, within BWI76_RS02030 at 418.103 kb on + strand, within BWI76_RS02030 at 418.103 kb on + strand, within BWI76_RS02030 at 418.103 kb on + strand, within BWI76_RS02030 at 418.119 kb on + strand, within BWI76_RS02030 at 418.119 kb on + strand, within BWI76_RS02030 at 418.127 kb on + strand, within BWI76_RS02030
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 415,417 - BWI76_RS02020 0.61 -0.6 415,417 - BWI76_RS02020 0.61 +0.0 415,428 - BWI76_RS02020 0.62 +0.3 415,593 + BWI76_RS02020 0.72 -0.0 415,695 - BWI76_RS02020 0.78 -1.2 415,715 - BWI76_RS02020 0.79 -0.1 415,828 + +1.5 415,836 - +3.1 415,848 - BWI76_RS02020 0.87 -0.5 415,937 - -0.3 415,950 + +0.5 415,952 + -1.4 415,958 - -0.8 415,969 + +0.9 415,995 + -0.8 416,014 + +0.8 416,014 + +1.4 416,014 + -2.3 416,022 - +0.9 416,024 + +0.4 416,032 - +0.4 416,048 + +1.3 416,048 + +0.1 416,070 + +1.9 416,078 - -0.7 416,083 - -0.7 416,083 - -0.9 416,173 + -0.4 416,173 + -0.1 416,181 - -0.0 416,181 - -0.8 416,181 - -0.6 416,181 - -1.4 416,183 + +0.7 416,183 - -0.5 416,185 + -1.1 416,185 + -0.3 416,191 - -0.0 416,193 + -0.0 416,193 + -3.0 416,193 + +0.4 416,193 + -0.1 416,193 + +0.8 416,193 + -0.7 416,193 + -2.7 416,201 - -0.1 416,201 - -0.5 416,201 - -1.4 416,201 - -1.1 416,201 - -0.0 416,201 - -2.6 416,201 - -3.4 416,201 - -1.1 416,201 - +0.4 416,201 - +0.5 416,201 - -0.7 416,201 - -0.4 416,201 - -0.0 416,201 - -2.5 416,201 - -4.0 416,201 - -0.1 416,227 - -0.6 416,237 - -0.8 416,237 - -1.4 416,400 - BWI76_RS02025 0.18 -0.5 416,448 + BWI76_RS02025 0.23 +1.9 416,520 + BWI76_RS02025 0.32 -0.6 416,590 + BWI76_RS02025 0.39 -2.6 416,680 + BWI76_RS02025 0.50 -1.5 416,736 - BWI76_RS02025 0.56 +0.1 416,838 + BWI76_RS02025 0.67 -0.0 416,851 - BWI76_RS02025 0.69 -0.5 416,851 - -0.1 416,851 - BWI76_RS02025 0.69 -2.6 416,851 - BWI76_RS02025 0.69 +0.9 416,901 + BWI76_RS02025 0.74 +0.9 416,905 + BWI76_RS02025 0.75 +0.6 416,909 - -1.1 416,914 - BWI76_RS02025 0.76 +0.9 416,915 + BWI76_RS02025 0.76 -1.9 416,925 + BWI76_RS02025 0.77 -1.3 416,938 + BWI76_RS02025 0.79 -1.3 416,949 + BWI76_RS02025 0.80 -2.3 416,953 + BWI76_RS02025 0.80 +0.9 416,953 + BWI76_RS02025 0.80 -0.1 416,953 + BWI76_RS02025 0.80 +0.9 416,955 - BWI76_RS02025 0.81 -0.7 416,958 + BWI76_RS02025 0.81 -2.7 416,959 + BWI76_RS02025 0.81 +1.5 416,959 - BWI76_RS02025 0.81 -1.7 416,961 - BWI76_RS02025 0.81 -1.7 416,961 - BWI76_RS02025 0.81 -1.1 416,961 - BWI76_RS02025 0.81 -3.1 416,964 + BWI76_RS02025 0.82 -0.6 416,964 + BWI76_RS02025 0.82 +0.9 416,966 - BWI76_RS02025 0.82 -1.4 416,966 - BWI76_RS02025 0.82 -1.4 416,967 - BWI76_RS02025 0.82 -0.8 416,972 - BWI76_RS02025 0.82 -2.8 416,975 + BWI76_RS02025 0.83 -1.6 416,990 + BWI76_RS02025 0.84 +0.9 416,998 - BWI76_RS02025 0.85 -0.1 417,023 + BWI76_RS02025 0.88 -0.7 417,023 + BWI76_RS02025 0.88 -2.4 417,023 + BWI76_RS02025 0.88 -0.7 417,023 + BWI76_RS02025 0.88 -2.2 417,023 + BWI76_RS02025 0.88 -0.1 417,023 + BWI76_RS02025 0.88 -0.8 417,023 + BWI76_RS02025 0.88 -3.4 417,023 + BWI76_RS02025 0.88 +0.0 417,031 - BWI76_RS02025 0.89 -0.7 417,031 - BWI76_RS02025 0.89 -0.1 417,031 - BWI76_RS02025 0.89 -1.7 417,031 - BWI76_RS02025 0.89 -0.7 417,031 - BWI76_RS02025 0.89 -2.0 417,031 - BWI76_RS02025 0.89 -2.7 417,032 + BWI76_RS02025 0.89 +0.9 417,033 + BWI76_RS02025 0.89 -0.3 417,036 - BWI76_RS02025 0.90 -1.4 417,042 + -2.1 417,056 + +0.6 417,058 + -1.1 417,058 + +0.9 417,058 + -1.1 417,063 + -1.9 417,063 + +1.5 417,063 + -0.9 417,064 + -1.1 417,064 + -1.4 417,066 - -1.6 417,066 - -0.1 417,066 - -0.1 417,066 - -1.0 417,069 + -3.0 417,069 + +0.9 417,069 + +0.9 417,069 + -1.0 417,069 + +0.9 417,069 + -1.7 417,069 + -1.9 417,069 + -1.4 417,069 + +1.3 417,071 - -2.1 417,071 - -1.2 417,072 - +0.4 417,076 + -3.4 417,076 + +0.0 417,076 + -2.7 417,077 - -0.7 417,077 - -0.2 417,077 - -0.0 417,077 - -0.5 417,077 - -0.1 417,077 - -0.1 417,077 - +0.8 417,084 - -0.1 417,084 - +0.9 417,136 - +0.9 417,150 + +1.9 417,313 + -1.4 417,315 - -2.1 417,321 - -1.0 417,332 + -0.7 417,332 + -1.9 417,340 - -1.1 417,340 - +0.4 417,340 - -2.8 417,340 - +0.6 417,346 + +0.9 417,346 + +0.9 417,354 - -1.8 417,369 + -3.1 417,369 + -0.1 417,369 + -0.4 417,369 + -1.1 417,369 + -1.1 417,369 + +0.7 417,409 - +0.9 417,468 + +0.8 417,534 + BWI76_RS02030 0.11 +1.1 417,540 + BWI76_RS02030 0.11 -1.7 417,567 + BWI76_RS02030 0.14 -1.7 417,570 - BWI76_RS02030 0.15 -1.7 417,575 - BWI76_RS02030 0.15 +0.9 417,620 + BWI76_RS02030 0.20 -1.1 417,623 - BWI76_RS02030 0.20 -0.1 417,641 - BWI76_RS02030 0.22 +0.7 417,734 - BWI76_RS02030 0.32 -0.9 417,737 + BWI76_RS02030 0.32 +0.3 417,745 - BWI76_RS02030 0.33 -0.1 417,812 + BWI76_RS02030 0.40 +0.9 417,837 + -1.1 417,881 + BWI76_RS02030 0.48 +0.9 417,919 + BWI76_RS02030 0.52 +0.9 417,961 - BWI76_RS02030 0.56 -1.2 417,971 - BWI76_RS02030 0.57 +0.9 417,973 + BWI76_RS02030 0.58 -1.9 417,973 + BWI76_RS02030 0.58 +0.9 417,981 - BWI76_RS02030 0.58 -1.1 418,036 + BWI76_RS02030 0.64 -0.8 418,061 + BWI76_RS02030 0.67 +2.5 418,061 + BWI76_RS02030 0.67 +0.0 418,061 + BWI76_RS02030 0.67 -0.7 418,061 + BWI76_RS02030 0.67 -1.0 418,066 + BWI76_RS02030 0.67 +0.8 418,066 + BWI76_RS02030 0.67 +0.0 418,071 + BWI76_RS02030 0.68 -2.7 418,071 + BWI76_RS02030 0.68 +1.6 418,071 + BWI76_RS02030 0.68 -1.1 418,071 + BWI76_RS02030 0.68 +0.5 418,071 + BWI76_RS02030 0.68 -0.2 418,071 + BWI76_RS02030 0.68 -0.7 418,071 + BWI76_RS02030 0.68 -0.2 418,071 + BWI76_RS02030 0.68 -0.1 418,071 + BWI76_RS02030 0.68 +0.1 418,074 - BWI76_RS02030 0.68 -0.1 418,074 - BWI76_RS02030 0.68 -0.8 418,079 - BWI76_RS02030 0.69 -0.7 418,082 + BWI76_RS02030 0.69 -0.2 418,082 + BWI76_RS02030 0.69 -0.2 418,082 + BWI76_RS02030 0.69 -1.7 418,082 + BWI76_RS02030 0.69 -0.1 418,082 + BWI76_RS02030 0.69 -3.7 418,082 + BWI76_RS02030 0.69 +0.5 418,084 + BWI76_RS02030 0.69 -0.1 418,084 + +0.9 418,090 - BWI76_RS02030 0.70 -1.3 418,090 - BWI76_RS02030 0.70 +0.5 418,092 - BWI76_RS02030 0.70 -0.1 418,092 - BWI76_RS02030 0.70 -2.9 418,098 + BWI76_RS02030 0.71 -0.5 418,103 + BWI76_RS02030 0.71 -0.5 418,103 + BWI76_RS02030 0.71 +0.3 418,103 + BWI76_RS02030 0.71 +0.8 418,103 + BWI76_RS02030 0.71 -2.1 418,103 + BWI76_RS02030 0.71 -0.5 418,103 + BWI76_RS02030 0.71 -2.2 418,119 + BWI76_RS02030 0.73 -0.7 418,119 + BWI76_RS02030 0.73 -1.4 418,127 + BWI76_RS02030 0.74 -0.7
Or see this region's nucleotide sequence