Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20685 and BWI76_RS20690 are separated by 118 nucleotides BWI76_RS20690 and BWI76_RS20695 overlap by 11 nucleotides BWI76_RS20695 and BWI76_RS20700 overlap by 1 nucleotides
BWI76_RS20685: BWI76_RS20685 - cysteine synthase B, at 4,326,837 to 4,327,748
_RS20685
BWI76_RS20690: BWI76_RS20690 - sulfate ABC transporter ATP-binding protein, at 4,327,867 to 4,328,961
_RS20690
BWI76_RS20695: BWI76_RS20695 - sulfate/thiosulfate transporter permease subunit, at 4,328,951 to 4,329,826
_RS20695
BWI76_RS20700: BWI76_RS20700 - sulfate/thiosulfate transporter subunit, at 4,329,826 to 4,330,659
_RS20700
Position (kb) 4327
4328
4329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4327.165 kb on - strand, within BWI76_RS20685 at 4327.801 kb on - strand at 4327.822 kb on - strand at 4327.979 kb on + strand, within BWI76_RS20690 at 4328.069 kb on + strand, within BWI76_RS20690 at 4328.214 kb on - strand, within BWI76_RS20690 at 4328.633 kb on + strand, within BWI76_RS20690 at 4328.766 kb on + strand, within BWI76_RS20690 at 4328.766 kb on + strand, within BWI76_RS20690 at 4328.785 kb on + strand, within BWI76_RS20690 at 4328.885 kb on - strand at 4328.914 kb on - strand at 4329.541 kb on - strand, within BWI76_RS20695 at 4329.542 kb on + strand, within BWI76_RS20695 at 4329.550 kb on - strand, within BWI76_RS20695 at 4329.748 kb on + strand at 4329.874 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 4,327,165 - BWI76_RS20685 0.36 +3.5 4,327,801 - -0.5 4,327,822 - -0.1 4,327,979 + BWI76_RS20690 0.10 -3.1 4,328,069 + BWI76_RS20690 0.18 -1.2 4,328,214 - BWI76_RS20690 0.32 -0.4 4,328,633 + BWI76_RS20690 0.70 -1.5 4,328,766 + BWI76_RS20690 0.82 -1.1 4,328,766 + BWI76_RS20690 0.82 -1.6 4,328,785 + BWI76_RS20690 0.84 -2.6 4,328,885 - +0.8 4,328,914 - +0.4 4,329,541 - BWI76_RS20695 0.67 -0.8 4,329,542 + BWI76_RS20695 0.67 +1.6 4,329,550 - BWI76_RS20695 0.68 +0.6 4,329,748 + -2.2 4,329,874 - +0.3
Or see this region's nucleotide sequence