Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15785 and BWI76_RS15790 overlap by 4 nucleotides BWI76_RS15790 and BWI76_RS15795 are separated by 133 nucleotides BWI76_RS15795 and BWI76_RS15800 are separated by 39 nucleotides BWI76_RS15800 and BWI76_RS15805 are separated by 104 nucleotides
BWI76_RS15785: BWI76_RS15785 - replication protein, at 3,285,556 to 3,286,017
_RS15785
BWI76_RS15790: BWI76_RS15790 - replication protein, at 3,286,014 to 3,286,742
_RS15790
BWI76_RS15795: BWI76_RS15795 - bacteriophage CII family protein, at 3,286,876 to 3,287,097
_RS15795
BWI76_RS15800: BWI76_RS15800 - transcriptional regulator, at 3,287,137 to 3,287,370
_RS15800
BWI76_RS15805: BWI76_RS15805 - hypothetical protein, at 3,287,475 to 3,288,164
_RS15805
Position (kb) 3286
3287
3288 Strain fitness (log2 ratio) -1
0
1 at 3285.998 kb on + strand at 3286.105 kb on + strand, within BWI76_RS15790 at 3286.245 kb on + strand, within BWI76_RS15790 at 3286.453 kb on - strand, within BWI76_RS15790 at 3286.687 kb on + strand at 3286.709 kb on - strand at 3286.717 kb on - strand at 3286.925 kb on + strand, within BWI76_RS15795 at 3286.974 kb on + strand, within BWI76_RS15795 at 3287.135 kb on + strand at 3287.186 kb on + strand, within BWI76_RS15800 at 3287.292 kb on + strand, within BWI76_RS15800
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 3,285,998 + +1.1 3,286,105 + BWI76_RS15790 0.12 -0.1 3,286,245 + BWI76_RS15790 0.32 -1.1 3,286,453 - BWI76_RS15790 0.60 +0.9 3,286,687 + +0.2 3,286,709 - +0.1 3,286,717 - +0.4 3,286,925 + BWI76_RS15795 0.22 +1.6 3,286,974 + BWI76_RS15795 0.44 +0.7 3,287,135 + -0.1 3,287,186 + BWI76_RS15800 0.21 -0.1 3,287,292 + BWI76_RS15800 0.66 -0.1
Or see this region's nucleotide sequence