Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15730 and BWI76_RS15735 overlap by 8 nucleotides BWI76_RS15735 and BWI76_RS15740 overlap by 4 nucleotides BWI76_RS15740 and BWI76_RS15745 overlap by 1 nucleotides BWI76_RS15745 and BWI76_RS15750 overlap by 4 nucleotides
BWI76_RS15730: BWI76_RS15730 - hypothetical protein, at 3,280,237 to 3,280,467
_RS15730
BWI76_RS15735: BWI76_RS15735 - hypothetical protein, at 3,280,460 to 3,281,005
_RS15735
BWI76_RS15740: BWI76_RS15740 - HNH endonuclease, at 3,281,002 to 3,281,382
_RS15740
BWI76_RS15745: BWI76_RS15745 - hypothetical protein, at 3,281,382 to 3,282,116
_RS15745
BWI76_RS15750: BWI76_RS15750 - hypothetical protein, at 3,282,113 to 3,282,430
_RS15750
Position (kb) 3281
3282 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3280.350 kb on - strand, within BWI76_RS15730 at 3280.459 kb on - strand at 3280.712 kb on + strand, within BWI76_RS15735 at 3280.717 kb on - strand, within BWI76_RS15735 at 3280.976 kb on - strand at 3281.124 kb on - strand, within BWI76_RS15740 at 3281.236 kb on + strand, within BWI76_RS15740 at 3281.238 kb on + strand, within BWI76_RS15740 at 3281.520 kb on - strand, within BWI76_RS15745 at 3281.692 kb on + strand, within BWI76_RS15745 at 3281.700 kb on - strand, within BWI76_RS15745 at 3281.917 kb on + strand, within BWI76_RS15745 at 3281.925 kb on - strand, within BWI76_RS15745 at 3282.080 kb on + strand at 3282.127 kb on + strand at 3282.163 kb on + strand, within BWI76_RS15750
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 3,280,350 - BWI76_RS15730 0.49 +0.4 3,280,459 - -0.5 3,280,712 + BWI76_RS15735 0.46 +0.6 3,280,717 - BWI76_RS15735 0.47 -0.2 3,280,976 - +0.2 3,281,124 - BWI76_RS15740 0.32 -3.4 3,281,236 + BWI76_RS15740 0.61 -1.5 3,281,238 + BWI76_RS15740 0.62 -1.8 3,281,520 - BWI76_RS15745 0.19 -0.7 3,281,692 + BWI76_RS15745 0.42 -2.2 3,281,700 - BWI76_RS15745 0.43 +1.0 3,281,917 + BWI76_RS15745 0.73 +1.1 3,281,925 - BWI76_RS15745 0.74 -1.0 3,282,080 + -2.0 3,282,127 + -1.9 3,282,163 + BWI76_RS15750 0.16 -2.5
Or see this region's nucleotide sequence