Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06695 and BWI76_RS06700 are separated by 56 nucleotides BWI76_RS06700 and BWI76_RS06705 are separated by 10 nucleotides BWI76_RS06705 and BWI76_RS06710 are separated by 4 nucleotides
BWI76_RS06695: BWI76_RS06695 - ABC transporter substrate-binding protein, at 1,403,818 to 1,405,050
_RS06695
BWI76_RS06700: BWI76_RS06700 - putative maltodextrin transport permease, at 1,405,107 to 1,406,414
_RS06700
BWI76_RS06705: BWI76_RS06705 - binding-protein-dependent transport system inner membrane protein, at 1,406,425 to 1,407,276
_RS06705
BWI76_RS06710: BWI76_RS06710 - glycosyl hydrolase, family 53, at 1,407,281 to 1,408,483
_RS06710
Position (kb) 1405
1406
1407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1404.203 kb on - strand, within BWI76_RS06695 at 1404.323 kb on - strand, within BWI76_RS06695 at 1404.386 kb on + strand, within BWI76_RS06695 at 1404.436 kb on + strand, within BWI76_RS06695 at 1404.588 kb on + strand, within BWI76_RS06695 at 1404.596 kb on + strand, within BWI76_RS06695 at 1404.696 kb on - strand, within BWI76_RS06695 at 1404.702 kb on - strand, within BWI76_RS06695 at 1404.950 kb on + strand at 1404.950 kb on + strand at 1405.293 kb on + strand, within BWI76_RS06700 at 1405.293 kb on + strand, within BWI76_RS06700 at 1405.393 kb on + strand, within BWI76_RS06700 at 1405.400 kb on + strand, within BWI76_RS06700 at 1405.461 kb on + strand, within BWI76_RS06700 at 1405.461 kb on + strand, within BWI76_RS06700 at 1405.461 kb on + strand, within BWI76_RS06700 at 1405.469 kb on - strand, within BWI76_RS06700 at 1405.534 kb on + strand, within BWI76_RS06700 at 1405.689 kb on + strand, within BWI76_RS06700 at 1405.942 kb on + strand, within BWI76_RS06700 at 1405.975 kb on - strand, within BWI76_RS06700 at 1405.995 kb on + strand, within BWI76_RS06700 at 1406.138 kb on + strand, within BWI76_RS06700 at 1406.144 kb on - strand, within BWI76_RS06700 at 1406.531 kb on + strand, within BWI76_RS06705 at 1406.560 kb on + strand, within BWI76_RS06705 at 1406.619 kb on + strand, within BWI76_RS06705 at 1406.825 kb on + strand, within BWI76_RS06705 at 1406.881 kb on + strand, within BWI76_RS06705 at 1406.929 kb on - strand, within BWI76_RS06705 at 1406.973 kb on - strand, within BWI76_RS06705 at 1407.115 kb on + strand, within BWI76_RS06705
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,404,203 - BWI76_RS06695 0.31 +0.2 1,404,323 - BWI76_RS06695 0.41 +1.9 1,404,386 + BWI76_RS06695 0.46 -1.1 1,404,436 + BWI76_RS06695 0.50 +0.9 1,404,588 + BWI76_RS06695 0.62 +0.2 1,404,596 + BWI76_RS06695 0.63 -0.1 1,404,696 - BWI76_RS06695 0.71 -0.7 1,404,702 - BWI76_RS06695 0.72 +0.0 1,404,950 + +0.1 1,404,950 + +1.2 1,405,293 + BWI76_RS06700 0.14 +0.2 1,405,293 + BWI76_RS06700 0.14 +0.5 1,405,393 + BWI76_RS06700 0.22 +1.0 1,405,400 + BWI76_RS06700 0.22 -0.8 1,405,461 + BWI76_RS06700 0.27 +0.3 1,405,461 + BWI76_RS06700 0.27 -0.3 1,405,461 + BWI76_RS06700 0.27 -2.9 1,405,469 - BWI76_RS06700 0.28 -2.7 1,405,534 + BWI76_RS06700 0.33 +1.3 1,405,689 + BWI76_RS06700 0.44 -0.4 1,405,942 + BWI76_RS06700 0.64 +0.8 1,405,975 - BWI76_RS06700 0.66 -0.4 1,405,995 + BWI76_RS06700 0.68 -1.1 1,406,138 + BWI76_RS06700 0.79 +0.2 1,406,144 - BWI76_RS06700 0.79 +0.7 1,406,531 + BWI76_RS06705 0.12 +0.1 1,406,560 + BWI76_RS06705 0.16 +0.6 1,406,619 + BWI76_RS06705 0.23 -0.1 1,406,825 + BWI76_RS06705 0.47 -0.6 1,406,881 + BWI76_RS06705 0.54 -2.4 1,406,929 - BWI76_RS06705 0.59 +0.8 1,406,973 - BWI76_RS06705 0.64 +1.0 1,407,115 + BWI76_RS06705 0.81 +1.1
Or see this region's nucleotide sequence