Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06160 and BWI76_RS06165 are separated by 90 nucleotides BWI76_RS06165 and BWI76_RS06170 are separated by 46 nucleotides BWI76_RS06170 and BWI76_RS06175 are separated by 116 nucleotides
BWI76_RS06160: BWI76_RS06160 - alkaline phosphatase, at 1,294,075 to 1,295,505
_RS06160
BWI76_RS06165: BWI76_RS06165 - phosphate starvation-inducible protein PsiF, at 1,295,596 to 1,295,916
_RS06165
BWI76_RS06170: BWI76_RS06170 - pyrroline-5-carboxylate reductase, at 1,295,963 to 1,296,772
_RS06170
BWI76_RS06175: BWI76_RS06175 - DUF188 domain-containing protein, at 1,296,889 to 1,297,347
_RS06175
Position (kb) 1295
1296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1294.608 kb on + strand, within BWI76_RS06160 at 1294.808 kb on + strand, within BWI76_RS06160 at 1294.816 kb on - strand, within BWI76_RS06160 at 1294.897 kb on - strand, within BWI76_RS06160 at 1294.908 kb on + strand, within BWI76_RS06160 at 1294.916 kb on - strand, within BWI76_RS06160 at 1294.953 kb on + strand, within BWI76_RS06160 at 1294.964 kb on + strand, within BWI76_RS06160 at 1294.972 kb on - strand, within BWI76_RS06160 at 1295.017 kb on - strand, within BWI76_RS06160 at 1295.210 kb on + strand, within BWI76_RS06160 at 1295.242 kb on - strand, within BWI76_RS06160 at 1295.312 kb on + strand, within BWI76_RS06160 at 1295.464 kb on + strand at 1295.477 kb on - strand at 1295.477 kb on - strand at 1295.562 kb on + strand at 1295.570 kb on - strand at 1295.594 kb on - strand at 1295.675 kb on + strand, within BWI76_RS06165 at 1295.727 kb on + strand, within BWI76_RS06165 at 1295.775 kb on + strand, within BWI76_RS06165 at 1295.827 kb on + strand, within BWI76_RS06165 at 1295.848 kb on + strand, within BWI76_RS06165
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,294,608 + BWI76_RS06160 0.37 +1.6 1,294,808 + BWI76_RS06160 0.51 -0.2 1,294,816 - BWI76_RS06160 0.52 +0.2 1,294,897 - BWI76_RS06160 0.57 +0.4 1,294,908 + BWI76_RS06160 0.58 -0.6 1,294,916 - BWI76_RS06160 0.59 +0.9 1,294,953 + BWI76_RS06160 0.61 -0.1 1,294,964 + BWI76_RS06160 0.62 +0.6 1,294,972 - BWI76_RS06160 0.63 +0.1 1,295,017 - BWI76_RS06160 0.66 -2.1 1,295,210 + BWI76_RS06160 0.79 -0.5 1,295,242 - BWI76_RS06160 0.82 +1.8 1,295,312 + BWI76_RS06160 0.86 -0.7 1,295,464 + -0.1 1,295,477 - +1.4 1,295,477 - -1.0 1,295,562 + +0.3 1,295,570 - -0.2 1,295,594 - -0.4 1,295,675 + BWI76_RS06165 0.25 +0.2 1,295,727 + BWI76_RS06165 0.41 +1.1 1,295,775 + BWI76_RS06165 0.56 +0.8 1,295,827 + BWI76_RS06165 0.72 +1.5 1,295,848 + BWI76_RS06165 0.79 +0.0
Or see this region's nucleotide sequence