Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04315

Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04310 and BWI76_RS04315 are separated by 505 nucleotidesBWI76_RS04315 and BWI76_RS04320 are separated by 53 nucleotides BWI76_RS04310: BWI76_RS04310 - hypothetical protein, at 888,547 to 888,726 _RS04310 BWI76_RS04315: BWI76_RS04315 - Na+/H+ antiporter NhaA, at 889,232 to 890,407 _RS04315 BWI76_RS04320: BWI76_RS04320 - transcriptional activator NhaR, at 890,461 to 891,360 _RS04320 Position (kb) 889 890 891Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 888.375 kb on + strandat 888.395 kb on + strandat 888.395 kb on + strandat 888.403 kb on - strandat 888.403 kb on - strandat 888.403 kb on - strandat 888.403 kb on - strandat 888.403 kb on - strandat 888.403 kb on - strandat 888.438 kb on - strandat 888.438 kb on - strandat 888.547 kb on - strandat 888.547 kb on - strandat 888.547 kb on - strandat 888.574 kb on - strand, within BWI76_RS04310at 888.642 kb on + strand, within BWI76_RS04310at 888.642 kb on + strand, within BWI76_RS04310at 888.642 kb on + strand, within BWI76_RS04310at 888.642 kb on + strand, within BWI76_RS04310at 888.642 kb on + strand, within BWI76_RS04310at 888.645 kb on - strand, within BWI76_RS04310at 888.647 kb on + strand, within BWI76_RS04310at 888.650 kb on - strand, within BWI76_RS04310at 888.650 kb on - strand, within BWI76_RS04310at 888.650 kb on - strand, within BWI76_RS04310at 888.650 kb on - strand, within BWI76_RS04310at 888.650 kb on - strand, within BWI76_RS04310at 888.689 kb on + strand, within BWI76_RS04310at 888.689 kb on + strand, within BWI76_RS04310at 888.707 kb on - strand, within BWI76_RS04310at 888.707 kb on - strand, within BWI76_RS04310at 888.734 kb on + strandat 888.757 kb on - strandat 888.792 kb on + strandat 888.810 kb on + strandat 888.811 kb on - strandat 888.818 kb on - strandat 888.841 kb on + strandat 888.841 kb on + strandat 888.849 kb on - strandat 888.849 kb on - strandat 888.849 kb on - strandat 888.854 kb on - strandat 888.854 kb on - strandat 888.856 kb on - strandat 888.950 kb on + strandat 888.950 kb on + strandat 889.089 kb on + strandat 889.303 kb on + strandat 889.315 kb on + strandat 889.330 kb on + strandat 889.370 kb on - strand, within BWI76_RS04315at 889.466 kb on - strand, within BWI76_RS04315at 889.508 kb on - strand, within BWI76_RS04315at 889.508 kb on - strand, within BWI76_RS04315at 889.603 kb on + strand, within BWI76_RS04315at 889.655 kb on + strand, within BWI76_RS04315at 889.750 kb on + strand, within BWI76_RS04315at 889.750 kb on + strand, within BWI76_RS04315at 889.750 kb on + strand, within BWI76_RS04315at 889.750 kb on + strand, within BWI76_RS04315at 889.758 kb on - strand, within BWI76_RS04315at 889.813 kb on + strand, within BWI76_RS04315at 889.851 kb on + strand, within BWI76_RS04315at 889.851 kb on + strand, within BWI76_RS04315at 889.866 kb on + strand, within BWI76_RS04315at 889.874 kb on - strand, within BWI76_RS04315at 890.085 kb on + strand, within BWI76_RS04315at 890.139 kb on - strand, within BWI76_RS04315at 890.189 kb on + strand, within BWI76_RS04315at 890.220 kb on - strand, within BWI76_RS04315at 890.286 kb on + strand, within BWI76_RS04315at 890.292 kb on + strandat 890.395 kb on - strandat 890.467 kb on - strandat 890.544 kb on + strandat 890.624 kb on + strand, within BWI76_RS04320at 890.880 kb on + strand, within BWI76_RS04320at 890.914 kb on + strand, within BWI76_RS04320at 891.025 kb on - strand, within BWI76_RS04320at 891.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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888,375 + +0.9
888,395 + -0.1
888,395 + +0.9
888,403 - +0.1
888,403 - +0.1
888,403 - +0.9
888,403 - -0.9
888,403 - +0.5
888,403 - -0.8
888,438 - -1.0
888,438 - -0.7
888,547 - -0.1
888,547 - -2.8
888,547 - -0.4
888,574 - BWI76_RS04310 0.15 +2.3
888,642 + BWI76_RS04310 0.53 -1.8
888,642 + BWI76_RS04310 0.53 -0.5
888,642 + BWI76_RS04310 0.53 -0.5
888,642 + BWI76_RS04310 0.53 -0.2
888,642 + BWI76_RS04310 0.53 -1.1
888,645 - BWI76_RS04310 0.54 -1.7
888,647 + BWI76_RS04310 0.56 -0.9
888,650 - BWI76_RS04310 0.57 +0.5
888,650 - BWI76_RS04310 0.57 +0.4
888,650 - BWI76_RS04310 0.57 +1.3
888,650 - BWI76_RS04310 0.57 -0.9
888,650 - BWI76_RS04310 0.57 -1.4
888,689 + BWI76_RS04310 0.79 -1.5
888,689 + BWI76_RS04310 0.79 -1.1
888,707 - BWI76_RS04310 0.89 +0.9
888,707 - BWI76_RS04310 0.89 -1.7
888,734 + -0.4
888,757 - -0.7
888,792 + -0.2
888,810 + -1.4
888,811 - +0.9
888,818 - -1.3
888,841 + -1.0
888,841 + -1.1
888,849 - +0.1
888,849 - -1.5
888,849 - +0.1
888,854 - +0.2
888,854 - +0.1
888,856 - -1.4
888,950 + +0.0
888,950 + -1.4
889,089 + -0.3
889,303 + -0.3
889,315 + -0.2
889,330 + +3.2
889,370 - BWI76_RS04315 0.12 +0.8
889,466 - BWI76_RS04315 0.20 +1.1
889,508 - BWI76_RS04315 0.23 +3.0
889,508 - BWI76_RS04315 0.23 +0.9
889,603 + BWI76_RS04315 0.32 -2.6
889,655 + BWI76_RS04315 0.36 -0.7
889,750 + BWI76_RS04315 0.44 +0.3
889,750 + BWI76_RS04315 0.44 +1.0
889,750 + BWI76_RS04315 0.44 -1.1
889,750 + BWI76_RS04315 0.44 +1.0
889,758 - BWI76_RS04315 0.45 +0.3
889,813 + BWI76_RS04315 0.49 -0.4
889,851 + BWI76_RS04315 0.53 +1.2
889,851 + BWI76_RS04315 0.53 -1.9
889,866 + BWI76_RS04315 0.54 +1.2
889,874 - BWI76_RS04315 0.55 -0.7
890,085 + BWI76_RS04315 0.73 +1.5
890,139 - BWI76_RS04315 0.77 -2.8
890,189 + BWI76_RS04315 0.81 +1.1
890,220 - BWI76_RS04315 0.84 -1.5
890,286 + BWI76_RS04315 0.90 +0.5
890,292 + +0.9
890,395 - -0.1
890,467 - +0.7
890,544 + +0.3
890,624 + BWI76_RS04320 0.18 -3.3
890,880 + BWI76_RS04320 0.47 +0.3
890,914 + BWI76_RS04320 0.50 +0.3
891,025 - BWI76_RS04320 0.63 -0.6
891,371 + +0.9

Or see this region's nucleotide sequence