Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03470 and BWI76_RS03475 are separated by 339 nucleotides BWI76_RS03475 and BWI76_RS03480 are separated by 53 nucleotides BWI76_RS03480 and BWI76_RS03485 are separated by 75 nucleotides BWI76_RS03485 and BWI76_RS03490 are separated by 181 nucleotides
BWI76_RS03470: BWI76_RS03470 - 50S ribosomal protein L16 arginine hydroxylase, at 716,409 to 717,533
_RS03470
BWI76_RS03475: BWI76_RS03475 - hypothetical protein, at 717,873 to 718,078
_RS03475
BWI76_RS03480: BWI76_RS03480 - 16S ribosomal RNA, at 718,132 to 719,685
_RS03480
BWI76_RS03485: BWI76_RS03485 - tRNA-Glu, at 719,761 to 719,836
_RS03485
BWI76_RS03490: BWI76_RS03490 - 23S ribosomal RNA, at 720,018 to 722,944
_RS03490
Position (kb) 718
719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 717.142 kb on + strand, within BWI76_RS03470 at 717.248 kb on + strand, within BWI76_RS03470 at 717.248 kb on + strand, within BWI76_RS03470 at 717.256 kb on - strand, within BWI76_RS03470 at 717.260 kb on + strand, within BWI76_RS03470 at 717.293 kb on - strand, within BWI76_RS03470 at 717.350 kb on + strand, within BWI76_RS03470 at 717.405 kb on - strand, within BWI76_RS03470 at 717.529 kb on + strand at 717.529 kb on + strand at 717.581 kb on + strand at 717.589 kb on - strand at 717.596 kb on + strand at 717.602 kb on + strand at 717.602 kb on + strand at 717.610 kb on - strand at 717.610 kb on - strand at 717.653 kb on - strand at 717.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 717,142 + BWI76_RS03470 0.65 +0.8 717,248 + BWI76_RS03470 0.75 -0.0 717,248 + BWI76_RS03470 0.75 +0.9 717,256 - BWI76_RS03470 0.75 +0.8 717,260 + BWI76_RS03470 0.76 -0.1 717,293 - BWI76_RS03470 0.79 +0.2 717,350 + BWI76_RS03470 0.84 +0.4 717,405 - BWI76_RS03470 0.89 +0.1 717,529 + +0.9 717,529 + -0.3 717,581 + -3.5 717,589 - -0.4 717,596 + -1.1 717,602 + +0.4 717,602 + +1.4 717,610 - +0.7 717,610 - +0.7 717,653 - +0.4 717,866 - +0.9
Or see this region's nucleotide sequence