Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01810 and BWI76_RS01815 are separated by 144 nucleotides BWI76_RS01815 and BWI76_RS01820 are separated by 191 nucleotides BWI76_RS01820 and BWI76_RS01825 are separated by 14 nucleotides
BWI76_RS01810: BWI76_RS01810 - N-acetyltransferase, at 369,406 to 369,915
_RS01810
BWI76_RS01815: BWI76_RS01815 - phosphate-starvation-inducible protein PsiE, at 370,060 to 370,470
_RS01815
BWI76_RS01820: BWI76_RS01820 - maltose ABC transporter, permease component 2 (MalG) <small>(from data)</small>, at 370,662 to 371,552
_RS01820
BWI76_RS01825: BWI76_RS01825 - maltose ABC transporter, permease component 1 (MalF) <small>(from data)</small>, at 371,567 to 373,111
_RS01825
Position (kb) 370
371
372 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 369.689 kb on - strand, within BWI76_RS01810 at 369.809 kb on - strand, within BWI76_RS01810 at 369.841 kb on - strand, within BWI76_RS01810 at 369.884 kb on - strand at 370.020 kb on + strand at 370.044 kb on + strand at 370.210 kb on - strand, within BWI76_RS01815 at 370.322 kb on + strand, within BWI76_RS01815 at 370.398 kb on - strand, within BWI76_RS01815 at 370.592 kb on + strand at 370.722 kb on + strand at 370.741 kb on + strand at 370.820 kb on + strand, within BWI76_RS01820 at 370.820 kb on + strand, within BWI76_RS01820 at 370.828 kb on - strand, within BWI76_RS01820 at 370.828 kb on - strand, within BWI76_RS01820 at 370.835 kb on - strand, within BWI76_RS01820 at 370.859 kb on + strand, within BWI76_RS01820 at 370.937 kb on - strand, within BWI76_RS01820 at 371.116 kb on - strand, within BWI76_RS01820 at 371.182 kb on + strand, within BWI76_RS01820 at 371.182 kb on + strand, within BWI76_RS01820 at 371.239 kb on + strand, within BWI76_RS01820 at 371.698 kb on + strand at 371.729 kb on - strand, within BWI76_RS01825 at 371.884 kb on + strand, within BWI76_RS01825 at 371.884 kb on + strand, within BWI76_RS01825 at 371.892 kb on - strand, within BWI76_RS01825 at 372.135 kb on + strand, within BWI76_RS01825 at 372.203 kb on + strand, within BWI76_RS01825 at 372.211 kb on - strand, within BWI76_RS01825 at 372.259 kb on - strand, within BWI76_RS01825 at 372.349 kb on + strand, within BWI76_RS01825 at 372.361 kb on + strand, within BWI76_RS01825 at 372.452 kb on + strand, within BWI76_RS01825
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 369,689 - BWI76_RS01810 0.55 -0.5 369,809 - BWI76_RS01810 0.79 -0.2 369,841 - BWI76_RS01810 0.85 -0.1 369,884 - -0.3 370,020 + -3.3 370,044 + +0.0 370,210 - BWI76_RS01815 0.36 -0.2 370,322 + BWI76_RS01815 0.64 -0.7 370,398 - BWI76_RS01815 0.82 +0.0 370,592 + -0.1 370,722 + +0.3 370,741 + +0.1 370,820 + BWI76_RS01820 0.18 +0.6 370,820 + BWI76_RS01820 0.18 +0.6 370,828 - BWI76_RS01820 0.19 +1.2 370,828 - BWI76_RS01820 0.19 +0.8 370,835 - BWI76_RS01820 0.19 -0.5 370,859 + BWI76_RS01820 0.22 -1.0 370,937 - BWI76_RS01820 0.31 +1.3 371,116 - BWI76_RS01820 0.51 +0.6 371,182 + BWI76_RS01820 0.58 +0.6 371,182 + BWI76_RS01820 0.58 +1.5 371,239 + BWI76_RS01820 0.65 +0.6 371,698 + -2.4 371,729 - BWI76_RS01825 0.10 +0.6 371,884 + BWI76_RS01825 0.21 -1.4 371,884 + BWI76_RS01825 0.21 -0.2 371,892 - BWI76_RS01825 0.21 +1.0 372,135 + BWI76_RS01825 0.37 -3.3 372,203 + BWI76_RS01825 0.41 -1.9 372,211 - BWI76_RS01825 0.42 -1.6 372,259 - BWI76_RS01825 0.45 -1.0 372,349 + BWI76_RS01825 0.51 +0.4 372,361 + BWI76_RS01825 0.51 +2.3 372,452 + BWI76_RS01825 0.57 -0.3
Or see this region's nucleotide sequence