Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01585 and BWI76_RS01590 are separated by 12 nucleotides BWI76_RS01590 and BWI76_RS01595 are separated by 12 nucleotides BWI76_RS01595 and BWI76_RS01600 are separated by 251 nucleotides
BWI76_RS01585: BWI76_RS01585 - transcriptional regulator, at 322,144 to 322,416
_RS01585
BWI76_RS01590: BWI76_RS01590 - hypothetical protein, at 322,429 to 323,121
_RS01590
BWI76_RS01595: BWI76_RS01595 - zinc resistance protein, at 323,134 to 323,556
_RS01595
BWI76_RS01600: BWI76_RS01600 - sensor protein ZraS, at 323,808 to 325,196
_RS01600
Position (kb) 323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 322.181 kb on + strand, within BWI76_RS01585 at 322.181 kb on + strand at 322.189 kb on - strand, within BWI76_RS01585 at 322.220 kb on + strand, within BWI76_RS01585 at 322.289 kb on + strand, within BWI76_RS01585 at 322.305 kb on - strand, within BWI76_RS01585 at 322.310 kb on - strand, within BWI76_RS01585 at 322.329 kb on + strand, within BWI76_RS01585 at 322.419 kb on + strand at 322.419 kb on - strand at 322.608 kb on - strand, within BWI76_RS01590 at 322.640 kb on - strand, within BWI76_RS01590 at 322.756 kb on - strand, within BWI76_RS01590 at 322.772 kb on + strand, within BWI76_RS01590 at 322.772 kb on + strand, within BWI76_RS01590 at 322.780 kb on - strand, within BWI76_RS01590 at 322.952 kb on + strand, within BWI76_RS01590 at 322.973 kb on - strand, within BWI76_RS01590 at 323.025 kb on - strand, within BWI76_RS01590 at 323.054 kb on + strand at 323.085 kb on + strand at 323.085 kb on - strand at 323.173 kb on + strand at 323.173 kb on + strand at 323.181 kb on - strand, within BWI76_RS01595 at 323.428 kb on - strand, within BWI76_RS01595 at 323.432 kb on + strand, within BWI76_RS01595 at 323.461 kb on - strand, within BWI76_RS01595 at 323.606 kb on - strand at 323.783 kb on - strand at 323.785 kb on - strand at 323.785 kb on - strand at 323.785 kb on - strand at 323.869 kb on + strand at 323.877 kb on - strand at 323.902 kb on + strand at 324.314 kb on + strand, within BWI76_RS01600 at 324.447 kb on + strand, within BWI76_RS01600 at 324.455 kb on - strand, within BWI76_RS01600 at 324.460 kb on - strand, within BWI76_RS01600
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 322,181 + BWI76_RS01585 0.14 +2.2 322,181 + +2.1 322,189 - BWI76_RS01585 0.16 +2.0 322,220 + BWI76_RS01585 0.28 +1.9 322,289 + BWI76_RS01585 0.53 +2.4 322,305 - BWI76_RS01585 0.59 +2.0 322,310 - BWI76_RS01585 0.61 +2.1 322,329 + BWI76_RS01585 0.68 +2.9 322,419 + +2.8 322,419 - +0.9 322,608 - BWI76_RS01590 0.26 +0.9 322,640 - BWI76_RS01590 0.30 +1.1 322,756 - BWI76_RS01590 0.47 -0.7 322,772 + BWI76_RS01590 0.49 -2.4 322,772 + BWI76_RS01590 0.49 +1.2 322,780 - BWI76_RS01590 0.51 +0.5 322,952 + BWI76_RS01590 0.75 -2.8 322,973 - BWI76_RS01590 0.78 +0.4 323,025 - BWI76_RS01590 0.86 +1.4 323,054 + +0.4 323,085 + +0.6 323,085 - +0.8 323,173 + -1.9 323,173 + -0.2 323,181 - BWI76_RS01595 0.11 +0.4 323,428 - BWI76_RS01595 0.70 +0.9 323,432 + BWI76_RS01595 0.70 -0.0 323,461 - BWI76_RS01595 0.77 +0.0 323,606 - +1.1 323,783 - +0.8 323,785 - -0.1 323,785 - -0.5 323,785 - -2.0 323,869 + +0.0 323,877 - -1.8 323,902 + -1.3 324,314 + BWI76_RS01600 0.36 +0.1 324,447 + BWI76_RS01600 0.46 +1.4 324,455 - BWI76_RS01600 0.47 +0.5 324,460 - BWI76_RS01600 0.47 -0.7
Or see this region's nucleotide sequence