Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00465 and BWI76_RS00470 are separated by 48 nucleotides BWI76_RS00470 and BWI76_RS00475 are separated by 156 nucleotides
BWI76_RS00465: BWI76_RS00465 - formate dehydrogenase-N subunit alpha, at 94,761 to 97,175
_RS00465
BWI76_RS00470: BWI76_RS00470 - sulfate ABC transporter substrate-binding protein, at 97,224 to 97,811
_RS00470
BWI76_RS00475: BWI76_RS00475 - sulfurtransferase FdhD, at 97,968 to 98,804
_RS00475
Position (kb) 97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 96.456 kb on - strand, within BWI76_RS00465 at 96.574 kb on + strand, within BWI76_RS00465 at 96.574 kb on + strand, within BWI76_RS00465 at 96.582 kb on - strand, within BWI76_RS00465 at 96.582 kb on - strand, within BWI76_RS00465 at 96.582 kb on - strand, within BWI76_RS00465 at 96.604 kb on + strand, within BWI76_RS00465 at 96.813 kb on - strand, within BWI76_RS00465 at 96.861 kb on + strand, within BWI76_RS00465 at 97.211 kb on + strand at 97.222 kb on + strand at 97.349 kb on + strand, within BWI76_RS00470 at 97.406 kb on + strand, within BWI76_RS00470 at 97.492 kb on - strand, within BWI76_RS00470 at 97.529 kb on + strand, within BWI76_RS00470 at 97.529 kb on + strand, within BWI76_RS00470 at 97.529 kb on + strand, within BWI76_RS00470 at 97.529 kb on + strand, within BWI76_RS00470 at 97.534 kb on + strand, within BWI76_RS00470 at 97.537 kb on - strand, within BWI76_RS00470 at 97.637 kb on + strand, within BWI76_RS00470 at 97.660 kb on + strand, within BWI76_RS00470 at 97.668 kb on - strand, within BWI76_RS00470 at 97.668 kb on - strand, within BWI76_RS00470 at 97.701 kb on - strand, within BWI76_RS00470 at 97.737 kb on + strand, within BWI76_RS00470 at 97.774 kb on + strand at 97.793 kb on + strand at 97.806 kb on - strand at 97.882 kb on - strand at 97.944 kb on - strand at 98.110 kb on - strand, within BWI76_RS00475 at 98.237 kb on - strand, within BWI76_RS00475 at 98.312 kb on + strand, within BWI76_RS00475 at 98.315 kb on - strand, within BWI76_RS00475 at 98.386 kb on + strand, within BWI76_RS00475 at 98.443 kb on + strand, within BWI76_RS00475 at 98.499 kb on - strand, within BWI76_RS00475 at 98.529 kb on - strand, within BWI76_RS00475 at 98.560 kb on - strand, within BWI76_RS00475 at 98.561 kb on - strand, within BWI76_RS00475 at 98.652 kb on + strand, within BWI76_RS00475
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 96,456 - BWI76_RS00465 0.70 +0.6 96,574 + BWI76_RS00465 0.75 +0.4 96,574 + BWI76_RS00465 0.75 -0.2 96,582 - BWI76_RS00465 0.75 +0.5 96,582 - BWI76_RS00465 0.75 +0.2 96,582 - BWI76_RS00465 0.75 -1.3 96,604 + BWI76_RS00465 0.76 +0.3 96,813 - BWI76_RS00465 0.85 -0.6 96,861 + BWI76_RS00465 0.87 -0.7 97,211 + -3.2 97,222 + -0.2 97,349 + BWI76_RS00470 0.21 +1.1 97,406 + BWI76_RS00470 0.31 -0.3 97,492 - BWI76_RS00470 0.46 -0.6 97,529 + BWI76_RS00470 0.52 -1.5 97,529 + BWI76_RS00470 0.52 +1.3 97,529 + BWI76_RS00470 0.52 +0.1 97,529 + BWI76_RS00470 0.52 +2.8 97,534 + BWI76_RS00470 0.53 -1.3 97,537 - BWI76_RS00470 0.53 +0.6 97,637 + BWI76_RS00470 0.70 +1.0 97,660 + BWI76_RS00470 0.74 -2.6 97,668 - BWI76_RS00470 0.76 -0.6 97,668 - BWI76_RS00470 0.76 +1.6 97,701 - BWI76_RS00470 0.81 +2.5 97,737 + BWI76_RS00470 0.87 +0.6 97,774 + +0.0 97,793 + -0.0 97,806 - +0.0 97,882 - +1.5 97,944 - +0.6 98,110 - BWI76_RS00475 0.17 -1.0 98,237 - BWI76_RS00475 0.32 +1.0 98,312 + BWI76_RS00475 0.41 -0.1 98,315 - BWI76_RS00475 0.41 +1.1 98,386 + BWI76_RS00475 0.50 +1.5 98,443 + BWI76_RS00475 0.57 +0.7 98,499 - BWI76_RS00475 0.63 +0.6 98,529 - BWI76_RS00475 0.67 +0.9 98,560 - BWI76_RS00475 0.71 +1.1 98,561 - BWI76_RS00475 0.71 +1.2 98,652 + BWI76_RS00475 0.82 +1.1
Or see this region's nucleotide sequence