Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20020 and PFLU_RS20025 are separated by 37 nucleotides PFLU_RS20025 and PFLU_RS20030 are separated by 2 nucleotides PFLU_RS20030 and PFLU_RS20035 are separated by 12 nucleotides
PFLU_RS20020: PFLU_RS20020 - gamma-glutamyltransferase family protein, at 4,531,141 to 4,532,751
_RS20020
PFLU_RS20025: PFLU_RS20025 - amino acid ABC transporter ATP-binding protein, at 4,532,789 to 4,533,568
_RS20025
PFLU_RS20030: PFLU_RS20030 - amino acid ABC transporter permease, at 4,533,571 to 4,534,347
_RS20030
PFLU_RS20035: PFLU_RS20035 - ABC transporter substrate-binding protein, at 4,534,360 to 4,535,166
_RS20035
Position (kb) 4532
4533
4534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.838 kb on + strand, within PFLU_RS20020 at 4531.838 kb on + strand, within PFLU_RS20020 at 4531.985 kb on + strand, within PFLU_RS20020 at 4531.986 kb on - strand, within PFLU_RS20020 at 4532.049 kb on - strand, within PFLU_RS20020 at 4532.049 kb on - strand, within PFLU_RS20020 at 4532.102 kb on + strand, within PFLU_RS20020 at 4532.356 kb on - strand, within PFLU_RS20020 at 4532.356 kb on - strand, within PFLU_RS20020 at 4532.424 kb on - strand, within PFLU_RS20020 at 4532.698 kb on + strand at 4532.698 kb on + strand at 4532.699 kb on - strand at 4532.699 kb on - strand at 4532.699 kb on - strand at 4532.699 kb on - strand at 4532.778 kb on + strand at 4532.779 kb on - strand at 4532.792 kb on + strand at 4532.953 kb on + strand, within PFLU_RS20025 at 4532.953 kb on + strand, within PFLU_RS20025 at 4533.473 kb on + strand, within PFLU_RS20025 at 4533.473 kb on + strand, within PFLU_RS20025 at 4533.474 kb on - strand, within PFLU_RS20025 at 4533.716 kb on + strand, within PFLU_RS20030 at 4533.716 kb on + strand, within PFLU_RS20030 at 4533.716 kb on + strand, within PFLU_RS20030 at 4533.717 kb on - strand, within PFLU_RS20030 at 4533.717 kb on - strand, within PFLU_RS20030 at 4533.717 kb on - strand, within PFLU_RS20030 at 4533.734 kb on + strand, within PFLU_RS20030 at 4533.734 kb on + strand, within PFLU_RS20030 at 4533.734 kb on + strand, within PFLU_RS20030 at 4533.735 kb on - strand, within PFLU_RS20030 at 4533.735 kb on - strand, within PFLU_RS20030 at 4533.735 kb on - strand, within PFLU_RS20030 at 4533.944 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.995 kb on + strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4533.996 kb on - strand, within PFLU_RS20030 at 4534.038 kb on + strand, within PFLU_RS20030 at 4534.039 kb on - strand, within PFLU_RS20030 at 4534.113 kb on - strand, within PFLU_RS20030 at 4534.159 kb on + strand, within PFLU_RS20030 at 4534.159 kb on + strand, within PFLU_RS20030 at 4534.159 kb on + strand, within PFLU_RS20030 at 4534.159 kb on + strand, within PFLU_RS20030 at 4534.159 kb on + strand, within PFLU_RS20030 at 4534.159 kb on + strand, within PFLU_RS20030 at 4534.159 kb on + strand, within PFLU_RS20030 at 4534.159 kb on + strand, within PFLU_RS20030 at 4534.160 kb on - strand, within PFLU_RS20030 at 4534.160 kb on - strand, within PFLU_RS20030 at 4534.160 kb on - strand, within PFLU_RS20030 at 4534.160 kb on - strand, within PFLU_RS20030 at 4534.160 kb on - strand, within PFLU_RS20030 at 4534.160 kb on - strand, within PFLU_RS20030 at 4534.160 kb on - strand, within PFLU_RS20030 at 4534.160 kb on - strand, within PFLU_RS20030 at 4534.160 kb on - strand, within PFLU_RS20030 at 4534.163 kb on + strand, within PFLU_RS20030 at 4534.164 kb on - strand, within PFLU_RS20030 at 4534.293 kb on - strand at 4534.316 kb on + strand at 4534.316 kb on + strand at 4534.316 kb on + strand at 4534.317 kb on - strand at 4534.317 kb on - strand at 4534.353 kb on + strand at 4534.353 kb on + strand at 4534.353 kb on + strand at 4534.353 kb on + strand at 4534.354 kb on - strand at 4534.354 kb on - strand at 4534.354 kb on - strand at 4534.409 kb on + strand at 4534.409 kb on + strand at 4534.409 kb on + strand at 4534.409 kb on + strand at 4534.409 kb on + strand at 4534.409 kb on + strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.410 kb on - strand at 4534.480 kb on + strand, within PFLU_RS20035 at 4534.480 kb on + strand, within PFLU_RS20035 at 4534.480 kb on + strand, within PFLU_RS20035 at 4534.481 kb on - strand, within PFLU_RS20035 at 4534.481 kb on - strand, within PFLU_RS20035 at 4534.553 kb on + strand, within PFLU_RS20035
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride remove 4,531,820 + PFLU_RS20020 0.42 +0.7 4,531,820 + PFLU_RS20020 0.42 -1.0 4,531,820 + PFLU_RS20020 0.42 -0.9 4,531,820 + PFLU_RS20020 0.42 -0.0 4,531,820 + PFLU_RS20020 0.42 -0.9 4,531,820 + PFLU_RS20020 0.42 -0.6 4,531,820 + PFLU_RS20020 0.42 -0.0 4,531,820 + PFLU_RS20020 0.42 -1.9 4,531,820 + PFLU_RS20020 0.42 +0.3 4,531,821 - PFLU_RS20020 0.42 +1.2 4,531,821 - PFLU_RS20020 0.42 -0.0 4,531,821 - PFLU_RS20020 0.42 -1.6 4,531,821 - PFLU_RS20020 0.42 +1.0 4,531,821 - PFLU_RS20020 0.42 -1.7 4,531,821 - PFLU_RS20020 0.42 -0.4 4,531,821 - PFLU_RS20020 0.42 +0.2 4,531,821 - PFLU_RS20020 0.42 -0.0 4,531,821 - PFLU_RS20020 0.42 +0.9 4,531,821 - PFLU_RS20020 0.42 +2.1 4,531,821 - PFLU_RS20020 0.42 -0.4 4,531,821 - PFLU_RS20020 0.42 -0.4 4,531,838 + PFLU_RS20020 0.43 -0.4 4,531,838 + PFLU_RS20020 0.43 -0.3 4,531,985 + PFLU_RS20020 0.52 -0.7 4,531,986 - PFLU_RS20020 0.52 -2.8 4,532,049 - PFLU_RS20020 0.56 +0.9 4,532,049 - PFLU_RS20020 0.56 +0.4 4,532,102 + PFLU_RS20020 0.60 -0.2 4,532,356 - PFLU_RS20020 0.75 +1.6 4,532,356 - PFLU_RS20020 0.75 -2.7 4,532,424 - PFLU_RS20020 0.80 +0.9 4,532,698 + +1.4 4,532,698 + +1.0 4,532,699 - -2.4 4,532,699 - -0.3 4,532,699 - -0.9 4,532,699 - +0.5 4,532,778 + +0.7 4,532,779 - -1.5 4,532,792 + -0.2 4,532,953 + PFLU_RS20025 0.21 -0.4 4,532,953 + PFLU_RS20025 0.21 -2.2 4,533,473 + PFLU_RS20025 0.88 +0.6 4,533,473 + PFLU_RS20025 0.88 -2.9 4,533,474 - PFLU_RS20025 0.88 -1.7 4,533,716 + PFLU_RS20030 0.19 +1.0 4,533,716 + PFLU_RS20030 0.19 -1.4 4,533,716 + PFLU_RS20030 0.19 +0.7 4,533,717 - PFLU_RS20030 0.19 +0.6 4,533,717 - PFLU_RS20030 0.19 -0.0 4,533,717 - PFLU_RS20030 0.19 +1.8 4,533,734 + PFLU_RS20030 0.21 +2.8 4,533,734 + PFLU_RS20030 0.21 +0.2 4,533,734 + PFLU_RS20030 0.21 +1.4 4,533,735 - PFLU_RS20030 0.21 +1.6 4,533,735 - PFLU_RS20030 0.21 +1.3 4,533,735 - PFLU_RS20030 0.21 +1.2 4,533,944 + PFLU_RS20030 0.48 -1.5 4,533,995 + PFLU_RS20030 0.55 -0.3 4,533,995 + PFLU_RS20030 0.55 +1.4 4,533,995 + PFLU_RS20030 0.55 +0.2 4,533,995 + PFLU_RS20030 0.55 -0.5 4,533,995 + PFLU_RS20030 0.55 +0.3 4,533,995 + PFLU_RS20030 0.55 -0.7 4,533,995 + PFLU_RS20030 0.55 +0.3 4,533,995 + PFLU_RS20030 0.55 -1.0 4,533,995 + PFLU_RS20030 0.55 +0.7 4,533,995 + PFLU_RS20030 0.55 -1.0 4,533,995 + PFLU_RS20030 0.55 +0.4 4,533,995 + PFLU_RS20030 0.55 +0.3 4,533,995 + PFLU_RS20030 0.55 -2.4 4,533,995 + PFLU_RS20030 0.55 -0.7 4,533,995 + PFLU_RS20030 0.55 +1.7 4,533,995 + PFLU_RS20030 0.55 -0.4 4,533,996 - PFLU_RS20030 0.55 -0.7 4,533,996 - PFLU_RS20030 0.55 +0.1 4,533,996 - PFLU_RS20030 0.55 +1.5 4,533,996 - PFLU_RS20030 0.55 -3.1 4,533,996 - PFLU_RS20030 0.55 -0.6 4,533,996 - PFLU_RS20030 0.55 -0.3 4,533,996 - PFLU_RS20030 0.55 -1.7 4,533,996 - PFLU_RS20030 0.55 -1.2 4,533,996 - PFLU_RS20030 0.55 -0.4 4,533,996 - PFLU_RS20030 0.55 +0.8 4,533,996 - PFLU_RS20030 0.55 +0.2 4,533,996 - PFLU_RS20030 0.55 -0.9 4,533,996 - PFLU_RS20030 0.55 -2.9 4,533,996 - PFLU_RS20030 0.55 +0.7 4,533,996 - PFLU_RS20030 0.55 -2.3 4,533,996 - PFLU_RS20030 0.55 -0.7 4,533,996 - PFLU_RS20030 0.55 +1.1 4,533,996 - PFLU_RS20030 0.55 +1.6 4,534,038 + PFLU_RS20030 0.60 +0.1 4,534,039 - PFLU_RS20030 0.60 +0.9 4,534,113 - PFLU_RS20030 0.70 +1.7 4,534,159 + PFLU_RS20030 0.76 +0.4 4,534,159 + PFLU_RS20030 0.76 +0.2 4,534,159 + PFLU_RS20030 0.76 -0.2 4,534,159 + PFLU_RS20030 0.76 +1.1 4,534,159 + PFLU_RS20030 0.76 +1.3 4,534,159 + PFLU_RS20030 0.76 +0.6 4,534,159 + PFLU_RS20030 0.76 -1.7 4,534,159 + PFLU_RS20030 0.76 +1.0 4,534,160 - PFLU_RS20030 0.76 +1.5 4,534,160 - PFLU_RS20030 0.76 +1.6 4,534,160 - PFLU_RS20030 0.76 +1.6 4,534,160 - PFLU_RS20030 0.76 -1.4 4,534,160 - PFLU_RS20030 0.76 +1.6 4,534,160 - PFLU_RS20030 0.76 -1.9 4,534,160 - PFLU_RS20030 0.76 -0.4 4,534,160 - PFLU_RS20030 0.76 -0.4 4,534,160 - PFLU_RS20030 0.76 +0.5 4,534,163 + PFLU_RS20030 0.76 +0.6 4,534,164 - PFLU_RS20030 0.76 +3.2 4,534,293 - +0.8 4,534,316 + +0.8 4,534,316 + +1.4 4,534,316 + -0.0 4,534,317 - +1.9 4,534,317 - -0.4 4,534,353 + -2.2 4,534,353 + -0.7 4,534,353 + -0.1 4,534,353 + -2.7 4,534,354 - +0.0 4,534,354 - -0.2 4,534,354 - -1.0 4,534,409 + +0.3 4,534,409 + +2.3 4,534,409 + -0.9 4,534,409 + +1.8 4,534,409 + -0.7 4,534,409 + -0.3 4,534,410 - +0.2 4,534,410 - +1.0 4,534,410 - +0.2 4,534,410 - +1.6 4,534,410 - -1.7 4,534,410 - -1.6 4,534,410 - -1.4 4,534,410 - +1.4 4,534,410 - +0.0 4,534,410 - +0.3 4,534,410 - -2.1 4,534,410 - -0.6 4,534,410 - +0.1 4,534,480 + PFLU_RS20035 0.15 -1.7 4,534,480 + PFLU_RS20035 0.15 +0.3 4,534,480 + PFLU_RS20035 0.15 +0.7 4,534,481 - PFLU_RS20035 0.15 -0.7 4,534,481 - PFLU_RS20035 0.15 +2.6 4,534,553 + PFLU_RS20035 0.24 -0.7
Or see this region's nucleotide sequence