Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02645 and HSERO_RS02650 are separated by 162 nucleotides HSERO_RS02650 and HSERO_RS02655 are separated by 90 nucleotides
HSERO_RS02645: HSERO_RS02645 - MFS transporter, at 579,602 to 581,056
_RS02645
HSERO_RS02650: HSERO_RS02650 - dihydroxy-acid dehydratase, at 581,219 to 583,081
_RS02650
HSERO_RS02655: HSERO_RS02655 - transporter, at 583,172 to 585,052
_RS02655
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -2
-1
0
1 at 580.231 kb on + strand, within HSERO_RS02645 at 580.405 kb on - strand, within HSERO_RS02645 at 580.493 kb on + strand, within HSERO_RS02645 at 580.522 kb on + strand, within HSERO_RS02645 at 580.708 kb on + strand, within HSERO_RS02645 at 580.829 kb on + strand, within HSERO_RS02645 at 580.946 kb on + strand at 580.992 kb on + strand at 581.010 kb on - strand at 581.036 kb on - strand at 581.171 kb on - strand at 581.179 kb on - strand at 581.199 kb on + strand at 581.207 kb on - strand at 581.254 kb on - strand at 581.328 kb on - strand at 581.343 kb on - strand at 581.536 kb on - strand, within HSERO_RS02650 at 581.536 kb on - strand, within HSERO_RS02650 at 581.639 kb on - strand, within HSERO_RS02650 at 582.106 kb on - strand, within HSERO_RS02650 at 582.163 kb on + strand, within HSERO_RS02650 at 582.170 kb on + strand at 582.203 kb on + strand, within HSERO_RS02650 at 582.222 kb on + strand, within HSERO_RS02650 at 582.228 kb on + strand, within HSERO_RS02650 at 582.257 kb on + strand, within HSERO_RS02650 at 582.299 kb on - strand, within HSERO_RS02650 at 582.299 kb on - strand, within HSERO_RS02650 at 582.637 kb on + strand, within HSERO_RS02650 at 582.637 kb on + strand, within HSERO_RS02650 at 582.768 kb on - strand, within HSERO_RS02650 at 582.824 kb on - strand, within HSERO_RS02650 at 583.030 kb on - strand at 583.156 kb on - strand at 583.341 kb on + strand at 583.359 kb on - strand at 583.464 kb on - strand, within HSERO_RS02655 at 583.816 kb on + strand, within HSERO_RS02655 at 583.911 kb on - strand, within HSERO_RS02655 at 583.911 kb on - strand, within HSERO_RS02655 at 584.049 kb on + strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 580,231 + HSERO_RS02645 0.43 -0.7 580,405 - HSERO_RS02645 0.55 -0.6 580,493 + HSERO_RS02645 0.61 -0.1 580,522 + HSERO_RS02645 0.63 +0.8 580,708 + HSERO_RS02645 0.76 +0.2 580,829 + HSERO_RS02645 0.84 -0.3 580,946 + -0.8 580,992 + -1.1 581,010 - +1.0 581,036 - +0.1 581,171 - -1.0 581,179 - -0.7 581,199 + +0.1 581,207 - -0.5 581,254 - -1.6 581,328 - -0.7 581,343 - -0.8 581,536 - HSERO_RS02650 0.17 -0.7 581,536 - HSERO_RS02650 0.17 +0.6 581,639 - HSERO_RS02650 0.23 -0.8 582,106 - HSERO_RS02650 0.48 -1.6 582,163 + HSERO_RS02650 0.51 -1.7 582,170 + -0.2 582,203 + HSERO_RS02650 0.53 -2.7 582,222 + HSERO_RS02650 0.54 -0.7 582,228 + HSERO_RS02650 0.54 -2.4 582,257 + HSERO_RS02650 0.56 -1.6 582,299 - HSERO_RS02650 0.58 -1.8 582,299 - HSERO_RS02650 0.58 -0.1 582,637 + HSERO_RS02650 0.76 -1.0 582,637 + HSERO_RS02650 0.76 +0.4 582,768 - HSERO_RS02650 0.83 -1.9 582,824 - HSERO_RS02650 0.86 -2.4 583,030 - -1.3 583,156 - -0.6 583,341 + +0.8 583,359 - +0.4 583,464 - HSERO_RS02655 0.16 +0.7 583,816 + HSERO_RS02655 0.34 -0.3 583,911 - HSERO_RS02655 0.39 -0.1 583,911 - HSERO_RS02655 0.39 +0.3 584,049 + HSERO_RS02655 0.47 +0.5 584,057 - HSERO_RS02655 0.47 -0.0 584,057 - HSERO_RS02655 0.47 -0.0 584,057 - HSERO_RS02655 0.47 -0.9
Or see this region's nucleotide sequence