Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26930

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26920 and BWI76_RS26925 overlap by 23 nucleotidesBWI76_RS26925 and BWI76_RS26930 overlap by 38 nucleotidesBWI76_RS26930 and BWI76_RS26935 are separated by 167 nucleotidesBWI76_RS26935 and BWI76_RS26940 are separated by 93 nucleotides BWI76_RS26920: BWI76_RS26920 - DNA-3-methyladenine glycosylase I, at 5,584,340 to 5,584,921 _RS26920 BWI76_RS26925: BWI76_RS26925 - N-acetyltransferase, at 5,584,899 to 5,585,345 _RS26925 BWI76_RS26930: BWI76_RS26930 - biotin sulfoxide reductase, at 5,585,308 to 5,587,638 _RS26930 BWI76_RS26935: BWI76_RS26935 - OmpA family lipoprotein, at 5,587,806 to 5,588,468 _RS26935 BWI76_RS26940: BWI76_RS26940 - transcriptional regulator, at 5,588,562 to 5,589,578 _RS26940 Position (kb) 5585 5586 5587 5588Strain fitness (log2 ratio) -2 -1 0 1at 5584.329 kb on + strandat 5584.378 kb on - strandat 5584.378 kb on - strandat 5584.515 kb on + strand, within BWI76_RS26920at 5584.533 kb on - strand, within BWI76_RS26920at 5584.571 kb on + strand, within BWI76_RS26920at 5584.830 kb on + strand, within BWI76_RS26920at 5584.830 kb on + strand, within BWI76_RS26920at 5584.840 kb on + strand, within BWI76_RS26920at 5584.848 kb on - strand, within BWI76_RS26920at 5584.852 kb on + strand, within BWI76_RS26920at 5584.900 kb on - strandat 5585.003 kb on - strand, within BWI76_RS26925at 5585.097 kb on - strand, within BWI76_RS26925at 5585.165 kb on + strand, within BWI76_RS26925at 5585.200 kb on + strandat 5585.200 kb on + strand, within BWI76_RS26925at 5585.200 kb on + strand, within BWI76_RS26925at 5585.200 kb on + strand, within BWI76_RS26925at 5585.200 kb on + strand, within BWI76_RS26925at 5585.200 kb on + strand, within BWI76_RS26925at 5585.208 kb on - strand, within BWI76_RS26925at 5585.208 kb on - strand, within BWI76_RS26925at 5585.208 kb on - strand, within BWI76_RS26925at 5585.208 kb on - strand, within BWI76_RS26925at 5585.208 kb on - strand, within BWI76_RS26925at 5585.208 kb on - strand, within BWI76_RS26925at 5585.208 kb on - strand, within BWI76_RS26925at 5585.244 kb on - strand, within BWI76_RS26925at 5585.255 kb on - strand, within BWI76_RS26925at 5585.312 kb on + strandat 5585.475 kb on + strandat 5585.625 kb on + strand, within BWI76_RS26930at 5585.633 kb on - strand, within BWI76_RS26930at 5585.726 kb on + strand, within BWI76_RS26930at 5585.747 kb on - strand, within BWI76_RS26930at 5586.496 kb on + strand, within BWI76_RS26930at 5586.499 kb on - strand, within BWI76_RS26930at 5586.674 kb on - strand, within BWI76_RS26930at 5586.870 kb on + strand, within BWI76_RS26930at 5586.878 kb on - strand, within BWI76_RS26930at 5586.967 kb on + strand, within BWI76_RS26930at 5587.177 kb on + strand, within BWI76_RS26930at 5587.277 kb on + strand, within BWI76_RS26930at 5587.455 kb on + strandat 5587.643 kb on + strandat 5587.669 kb on + strandat 5587.877 kb on + strand, within BWI76_RS26935at 5587.877 kb on + strand, within BWI76_RS26935at 5587.877 kb on + strand, within BWI76_RS26935at 5587.885 kb on - strand, within BWI76_RS26935at 5587.885 kb on - strand, within BWI76_RS26935at 5587.947 kb on + strand, within BWI76_RS26935at 5587.948 kb on + strand, within BWI76_RS26935at 5587.956 kb on - strand, within BWI76_RS26935at 5587.956 kb on - strand, within BWI76_RS26935at 5588.049 kb on - strand, within BWI76_RS26935at 5588.067 kb on - strand, within BWI76_RS26935at 5588.196 kb on - strand, within BWI76_RS26935at 5588.280 kb on + strand, within BWI76_RS26935at 5588.419 kb on + strandat 5588.424 kb on + strandat 5588.503 kb on + strandat 5588.564 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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5,584,329 + -0.2
5,584,378 - -0.1
5,584,378 - -1.4
5,584,515 + BWI76_RS26920 0.30 +0.4
5,584,533 - BWI76_RS26920 0.33 -1.9
5,584,571 + BWI76_RS26920 0.40 -1.1
5,584,830 + BWI76_RS26920 0.84 +0.4
5,584,830 + BWI76_RS26920 0.84 -0.3
5,584,840 + BWI76_RS26920 0.86 +0.8
5,584,848 - BWI76_RS26920 0.87 -0.1
5,584,852 + BWI76_RS26920 0.88 -2.2
5,584,900 - -0.0
5,585,003 - BWI76_RS26925 0.23 -1.0
5,585,097 - BWI76_RS26925 0.44 +0.2
5,585,165 + BWI76_RS26925 0.60 -0.3
5,585,200 + -0.0
5,585,200 + BWI76_RS26925 0.67 +0.0
5,585,200 + BWI76_RS26925 0.67 +0.5
5,585,200 + BWI76_RS26925 0.67 +0.3
5,585,200 + BWI76_RS26925 0.67 -0.4
5,585,200 + BWI76_RS26925 0.67 +0.0
5,585,208 - BWI76_RS26925 0.69 +0.0
5,585,208 - BWI76_RS26925 0.69 -0.8
5,585,208 - BWI76_RS26925 0.69 -0.1
5,585,208 - BWI76_RS26925 0.69 +0.0
5,585,208 - BWI76_RS26925 0.69 -2.0
5,585,208 - BWI76_RS26925 0.69 -0.3
5,585,208 - BWI76_RS26925 0.69 +1.3
5,585,244 - BWI76_RS26925 0.77 -0.3
5,585,255 - BWI76_RS26925 0.80 -0.1
5,585,312 + -0.6
5,585,475 + +0.2
5,585,625 + BWI76_RS26930 0.14 +1.6
5,585,633 - BWI76_RS26930 0.14 +0.2
5,585,726 + BWI76_RS26930 0.18 -1.7
5,585,747 - BWI76_RS26930 0.19 +1.6
5,586,496 + BWI76_RS26930 0.51 +0.9
5,586,499 - BWI76_RS26930 0.51 -0.3
5,586,674 - BWI76_RS26930 0.59 -2.2
5,586,870 + BWI76_RS26930 0.67 +1.1
5,586,878 - BWI76_RS26930 0.67 +0.4
5,586,967 + BWI76_RS26930 0.71 +0.4
5,587,177 + BWI76_RS26930 0.80 +1.2
5,587,277 + BWI76_RS26930 0.84 -1.2
5,587,455 + +0.0
5,587,643 + -0.2
5,587,669 + -0.1
5,587,877 + BWI76_RS26935 0.11 +0.2
5,587,877 + BWI76_RS26935 0.11 -0.5
5,587,877 + BWI76_RS26935 0.11 +1.1
5,587,885 - BWI76_RS26935 0.12 -0.5
5,587,885 - BWI76_RS26935 0.12 +0.1
5,587,947 + BWI76_RS26935 0.21 -0.2
5,587,948 + BWI76_RS26935 0.21 +1.2
5,587,956 - BWI76_RS26935 0.23 -0.8
5,587,956 - BWI76_RS26935 0.23 +0.1
5,588,049 - BWI76_RS26935 0.37 -0.6
5,588,067 - BWI76_RS26935 0.39 +0.3
5,588,196 - BWI76_RS26935 0.59 +0.3
5,588,280 + BWI76_RS26935 0.71 -2.3
5,588,419 + -0.9
5,588,424 + +0.2
5,588,503 + -0.1
5,588,564 + +0.1

Or see this region's nucleotide sequence