Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20010

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20000 and BWI76_RS20005 are separated by 96 nucleotidesBWI76_RS20005 and BWI76_RS20010 are separated by 269 nucleotidesBWI76_RS20010 and BWI76_RS20015 are separated by 49 nucleotides BWI76_RS20000: BWI76_RS20000 - competence/damage-inducible protein A, at 4,190,166 to 4,191,362 _RS20000 BWI76_RS20005: BWI76_RS20005 - membrane protein, at 4,191,459 to 4,192,001 _RS20005 BWI76_RS20010: BWI76_RS20010 - catalase, at 4,192,271 to 4,193,719 _RS20010 BWI76_RS20015: BWI76_RS20015 - hypothetical protein, at 4,193,769 to 4,194,785 _RS20015 Position (kb) 4192 4193 4194Strain fitness (log2 ratio) -1 0 1 2at 4191.665 kb on + strand, within BWI76_RS20005at 4191.715 kb on + strand, within BWI76_RS20005at 4191.904 kb on + strand, within BWI76_RS20005at 4191.926 kb on + strand, within BWI76_RS20005at 4191.957 kb on + strandat 4192.059 kb on + strandat 4192.099 kb on - strandat 4192.114 kb on - strandat 4192.291 kb on - strandat 4192.335 kb on + strandat 4192.562 kb on - strand, within BWI76_RS20010at 4192.612 kb on + strand, within BWI76_RS20010at 4192.612 kb on + strand, within BWI76_RS20010at 4193.156 kb on - strandat 4193.295 kb on + strand, within BWI76_RS20010at 4193.531 kb on - strand, within BWI76_RS20010at 4193.655 kb on - strandat 4193.839 kb on - strandat 4194.512 kb on + strand, within BWI76_RS20015

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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4,191,665 + BWI76_RS20005 0.38 -0.1
4,191,715 + BWI76_RS20005 0.47 -0.2
4,191,904 + BWI76_RS20005 0.82 -0.4
4,191,926 + BWI76_RS20005 0.86 -1.5
4,191,957 + +1.3
4,192,059 + -1.6
4,192,099 - +0.3
4,192,114 - +1.8
4,192,291 - +0.1
4,192,335 + +0.6
4,192,562 - BWI76_RS20010 0.20 +0.4
4,192,612 + BWI76_RS20010 0.24 +0.7
4,192,612 + BWI76_RS20010 0.24 +0.6
4,193,156 - -0.2
4,193,295 + BWI76_RS20010 0.71 +0.3
4,193,531 - BWI76_RS20010 0.87 +0.4
4,193,655 - -0.5
4,193,839 - -0.7
4,194,512 + BWI76_RS20015 0.73 -0.8

Or see this region's nucleotide sequence