Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09135 and BWI76_RS09140 are separated by 2 nucleotides BWI76_RS09140 and BWI76_RS09145 are separated by 257 nucleotides BWI76_RS09145 and BWI76_RS09150 are separated by 28 nucleotides BWI76_RS09150 and BWI76_RS09155 are separated by 125 nucleotides
BWI76_RS09135: BWI76_RS09135 - oxidoreductase, at 1,929,961 to 1,931,073
_RS09135
BWI76_RS09140: BWI76_RS09140 - glutathione S-transferase, at 1,931,076 to 1,931,702
_RS09140
BWI76_RS09145: BWI76_RS09145 - serine-type D-Ala-D-Ala carboxypeptidase, at 1,931,960 to 1,933,162
_RS09145
BWI76_RS09150: BWI76_RS09150 - DNA-binding transcriptional repressor DeoR, at 1,933,191 to 1,933,949
_RS09150
BWI76_RS09155: BWI76_RS09155 - undecaprenyl-diphosphatase, at 1,934,075 to 1,934,668
_RS09155
Position (kb) 1931
1932
1933
1934 Strain fitness (log2 ratio) -1
0
1 at 1931.042 kb on - strand at 1931.229 kb on + strand, within BWI76_RS09140 at 1931.268 kb on + strand, within BWI76_RS09140 at 1931.352 kb on - strand, within BWI76_RS09140 at 1931.352 kb on - strand, within BWI76_RS09140 at 1931.400 kb on - strand, within BWI76_RS09140 at 1931.881 kb on + strand at 1932.218 kb on - strand, within BWI76_RS09145 at 1932.451 kb on + strand, within BWI76_RS09145 at 1932.507 kb on - strand, within BWI76_RS09145 at 1933.337 kb on + strand, within BWI76_RS09150 at 1933.391 kb on + strand, within BWI76_RS09150 at 1933.393 kb on - strand, within BWI76_RS09150 at 1933.765 kb on - strand, within BWI76_RS09150 at 1933.892 kb on - strand at 1933.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,931,042 - +0.8 1,931,229 + BWI76_RS09140 0.24 -0.3 1,931,268 + BWI76_RS09140 0.31 -0.1 1,931,352 - BWI76_RS09140 0.44 +0.2 1,931,352 - BWI76_RS09140 0.44 -0.8 1,931,400 - BWI76_RS09140 0.52 +0.2 1,931,881 + -0.0 1,932,218 - BWI76_RS09145 0.21 -0.8 1,932,451 + BWI76_RS09145 0.41 -0.9 1,932,507 - BWI76_RS09145 0.45 -1.0 1,933,337 + BWI76_RS09150 0.19 +0.2 1,933,391 + BWI76_RS09150 0.26 -0.3 1,933,393 - BWI76_RS09150 0.27 +1.3 1,933,765 - BWI76_RS09150 0.76 -0.3 1,933,892 - -0.0 1,933,896 + -0.4
Or see this region's nucleotide sequence